Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p002884 Quercus lobata HOM05D000115 ORTHO05D003511 2.5e-101 372.1 182 100.0
QL09p001102 Quercus lobata HOM05D000030 ORTHO05D003511 1.3e-20 104.0 93 57.0
QL09p003987 Quercus lobata HOM05D000176 ORTHO05D003511 3.6e-20 102.4 89 58.4
PGSC0003DMG400007884 Solanum tuberosum HOM05D000115 ORTHO05D003511 2.4e-19 99.8 63 69.8
QL01p019309 Quercus lobata HOM05D000115 ORTHO05D003511 3.1e-19 99.4 58 75.9
Hund03578 Selenicereus undatus HOM05D000115 ORTHO05D003511 1.5e-18 97.1 60 75.0
Eucgr.J02567 Eucalyptus grandis HOM05D000115 ORTHO05D003511 2.6e-18 96.3 60 71.7
LjContig00247g0006698 Lotus japonicus HOM05D000115 ORTHO05D003511 3.4e-18 95.9 58 75.9
vmacro16980 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 4.5e-18 95.5 60 70.0
MD02G1108000 Malus domestica HOM05D000115 ORTHO05D003511 7.6e-18 94.7 57 75.4
MD15G1227500 Malus domestica HOM05D000115 ORTHO05D003511 7.6e-18 94.7 57 75.4
Actinidia22860 Actinidia chinensis HOM05D000115 ORTHO05D003511 9.9e-18 94.4 92 52.2
Ah.02g123230 Amaranthus hybridus HOM05D000115 ORTHO05D003511 9.9e-18 94.4 58 77.6
Dinv40223 Davidia involucrata HOM05D000534 ORTHO05D003511 9.9e-18 94.4 86 55.8
PGR102G0720 Punica granatum HOM05D000115 ORTHO05D003511 9.9e-18 94.4 60 71.7
Rhsim10G0191000 Rhododendron simsii HOM05D000115 ORTHO05D003511 2.9e-17 92.8 92 52.2
TPR.G35829 Trifolium pratense HOM05D000115 ORTHO05D003511 2.9e-17 92.8 58 72.4
Cfa010194 Carpinus fangiana HOM05D000115 ORTHO05D003511 3.8e-17 92.4 89 52.8
CSS0040979 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D003511 4.9e-17 92.0 90 52.2
Gohir.A07G172400 Gossypium hirsutum HOM05D000115 ORTHO05D003511 4.9e-17 92.0 95 48.4
Gohir.D07G179200 Gossypium hirsutum HOM05D000115 ORTHO05D003511 4.9e-17 92.0 95 48.4
Gorai.001G200300 Gossypium raimondii HOM05D000115 ORTHO05D003511 4.9e-17 92.0 95 48.4
Nitab4.5_0003141g0070 Nicotiana tabacum HOM05D000115 ORTHO05D003511 4.9e-17 92.0 59 72.9
Lalb_Chr05g0229471 Lupinus albus HOM05D000115 ORTHO05D003511 6.4e-17 91.7 68 63.2
Nitab4.5_0000855g0170 Nicotiana tabacum HOM05D000115 ORTHO05D003511 6.4e-17 91.7 59 72.9
Rhsim12G0012700 Rhododendron simsii HOM05D000115 ORTHO05D003511 6.4e-17 91.7 56 75.0
EL10Ac6g14705 Beta vulgaris HOM05D000115 ORTHO05D003511 8.4e-17 91.3 93 49.5
AUR62003714 Chenopodium quinoa HOM05D000115 ORTHO05D003511 8.4e-17 91.3 60 68.3
AUR62018026 Chenopodium quinoa HOM05D000115 ORTHO05D003511 8.4e-17 91.3 60 68.3
Duzib147G0660 Durio zibethinus HOM05D000115 ORTHO05D003511 8.4e-17 91.3 58 69.0
DCAR_014123 Daucus carota HOM05D000115 ORTHO05D003511 1.1e-16 90.9 90 54.4
Oeu045755.1 Olea europaea HOM05D000115 ORTHO05D003511 1.1e-16 90.9 58 72.4
MD13G1054400 Malus domestica HOM05D000115 ORTHO05D003511 1.4e-16 90.5 55 70.9
Peaxi162Scf00981g00421 Petunia axillaris HOM05D000115 ORTHO05D003511 1.4e-16 90.5 59 69.5
Thecc.01G001600 Theobroma cacao HOM05D000115 ORTHO05D003511 1.4e-16 90.5 58 69.0
TAR376G0183 Trochodendron aralioides HOM05D000115 ORTHO05D003511 1.4e-16 90.5 58 69.0
Atru.chr3.62 Acer truncatum HOM05D000115 ORTHO05D003511 1.9e-16 90.1 58 69.0
Cpa.g.sc6.351 Carica papaya HOM05D000115 ORTHO05D003511 1.9e-16 90.1 59 72.9
Glyma.16G114700 Glycine max HOM05D000115 ORTHO05D003511 1.9e-16 90.1 58 69.0
Medtr8g072600 Medicago truncatula HOM05D000115 ORTHO05D003511 1.9e-16 90.1 58 70.7
TWI53G0283 Tripterygium wilfordii HOM05D000115 ORTHO05D003511 2.4e-16 89.7 62 67.7
Ca_22445_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 3.2e-16 89.4 58 69.0
ClCG10G000100 Citrullus lanatus HOM05D000115 ORTHO05D003511 3.2e-16 89.4 59 71.2
Oeu043410.3 Olea europaea HOM05D000115 ORTHO05D003511 3.2e-16 89.4 58 70.7
GSVIVG01026440001 Vitis vinifera HOM05D000835 ORTHO05D007655 3.2e-16 89.4 56 69.6
Migut.K01156 Erythranthe guttata HOM05D000115 ORTHO05D003511 4.2e-16 89.0 58 72.4
Glyma.09G195800 Glycine max HOM05D000115 ORTHO05D003511 4.2e-16 89.0 58 67.2
SGA_v2.0_scaffold132G34571 Striga asiatica HOM05D000115 ORTHO05D003511 4.2e-16 89.0 58 70.7
vmacro20274 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 4.2e-16 89.0 90 51.1
CiPaw.13G128300 Carya illinoinensis HOM05D000115 ORTHO05D003511 5.4e-16 88.6 89 50.6
Sed0022104 Sechium edule HOM05D000115 ORTHO05D003511 5.4e-16 88.6 59 69.5
THA.LOC104826459 Tarenaya hassleriana HOM05D000115 ORTHO05D003511 5.4e-16 88.6 59 71.2
vmacro20272 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 5.4e-16 88.6 90 51.1
MELO3C013705.2 Cucumis melo HOM05D000115 ORTHO05D003511 7.1e-16 88.2 59 71.2
CsaV3_3G000110 Cucumis sativus L. HOM05D000115 ORTHO05D003511 7.1e-16 88.2 59 71.2
Lsat_1_v5_gn_2_73121 Lactuca sativa HOM05D000115 ORTHO05D003511 7.1e-16 88.2 87 52.9
Psat4g107160 Pisum sativum HOM05D000115 ORTHO05D003511 7.1e-16 88.2 58 69.0
FAN19G3058 Fragaria x ananassa HOM05D000115 ORTHO05D003511 9.3e-16 87.8 57 68.4
Prupe.7G187800 Prunus persica HOM05D000115 ORTHO05D003511 1.2e-15 87.4 56 71.4
FAN28G0496 Fragaria x ananassa HOM05D000115 ORTHO05D003511 1.6e-15 87.0 57 66.7
Peaxi162Scf00038g02647 Petunia axillaris HOM05D000115 ORTHO05D003511 1.6e-15 87.0 90 50.0
Phvul.003G272100 Phaseolus vulgaris HOM05D000115 ORTHO05D003511 1.6e-15 87.0 58 69.0
Solyc02g082230.4 Solanum lycopersicum HOM05D000115 ORTHO05D003511 1.6e-15 87.0 59 67.8
Sopen02g026890 Solanum pennellii HOM05D000115 ORTHO05D003511 1.6e-15 87.0 59 67.8
PGSC0003DMG400013661 Solanum tuberosum HOM05D000115 ORTHO05D003511 1.6e-15 87.0 59 67.8
RcHm_v2.0_Chr2g0096721 Rosa chinensis HOM05D000115 ORTHO05D003511 2.1e-15 86.7 57 66.7
Sabra11G0130400 Salix brachista HOM05D000115 ORTHO05D003511 2.1e-15 86.7 58 69.0
FAN23G0607 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.7e-15 86.3 57 66.7
FAN26G1982 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.7e-15 86.3 57 66.7
Pp3c22_17230 Physcomitrium patens HOM05D000115 ORTHO05D003511 2.7e-15 86.3 57 68.4
Potri.001G456600 Populus trichocarpa HOM05D000115 ORTHO05D003511 2.7e-15 86.3 58 67.2
ECA238G1247 Erigeron canadensis HOM05D000115 ORTHO05D003511 4.6e-15 85.5 87 52.9
SEGI_25777 Sequoiadendron giganteum HOM05D000806 ORTHO05D003511 6.0e-15 85.1 66 60.6
CARHR277770 Cardamine hirsuta HOM05D000115 ORTHO05D003511 7.9e-15 84.7 58 63.8
HanXRQChr10g0316191 Helianthus annuus HOM05D000115 ORTHO05D003511 7.9e-15 84.7 90 51.1
CAN.G809.3 Capsicum annuum HOM05D000115 ORTHO05D003511 1.0e-14 84.3 59 61.0
COL.COLO4_22569 Corchorus olitorius HOM05D000115 ORTHO05D003511 1.0e-14 84.3 58 63.8
MD06G1202700 Malus domestica HOM05D000115 ORTHO05D003511 1.0e-14 84.3 57 64.9
Prupe.5G201300 Prunus persica HOM05D000115 ORTHO05D003511 1.0e-14 84.3 56 67.9
Nn6g31606 Nelumbo nucifera HOM05D000115 ORTHO05D003511 1.3e-14 84.0 58 69.0
Prupe.2G305700 Prunus persica HOM05D000115 ORTHO05D003511 1.3e-14 84.0 56 67.9
Cc07_g12260 Coffea canephora HOM05D000115 ORTHO05D003511 1.8e-14 83.6 58 62.1
FAN23G1295 Fragaria x ananassa HOM05D000115 ORTHO05D003511 1.8e-14 83.6 57 64.9
MBI01_g22972_MAGBIO Magnolia biondii HOM05D000115 ORTHO05D003511 1.8e-14 83.6 58 67.2
AL697U10020 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 2.3e-14 83.2 58 62.1
AL8G41100 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 2.3e-14 83.2 58 62.1
A09p08440 Brassica napus HOM05D000115 ORTHO05D003511 2.3e-14 83.2 64 57.8
Aa31LG1G18030 Aethionema arabicum HOM05D000115 ORTHO05D003511 3.0e-14 82.8 62 56.5
AT5G63870 Arabidopsis thaliana HOM05D000115 ORTHO05D003511 3.0e-14 82.8 58 62.1
Thhalv10004310m.g Eutrema salsugineum HOM05D000115 ORTHO05D003511 3.0e-14 82.8 64 57.8
PSO170G6490 Papaver somniferum HOM05D000115 ORTHO05D003511 3.0e-14 82.8 59 64.4
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 3.0e-14 82.8 86 50.0
Carub.0008s2464 Capsella rubella HOM05D000115 ORTHO05D003511 5.1e-14 82.0 58 60.3
Ciclev10025593m.g Citrus clementina HOM05D000115 ORTHO05D003511 5.1e-14 82.0 58 65.5
Prupe.5G202500 Prunus persica HOM05D000115 ORTHO05D003511 5.1e-14 82.0 56 66.1
BcaC04g23350 Brassica carinata HOM05D000115 ORTHO05D003511 6.7e-14 81.6 62 58.1
Sp2g26930 Schrenkiella parvula HOM05D000115 ORTHO05D003511 6.7e-14 81.6 62 58.1
arahy.Tifrunner.gnm1.ann1.Q538IK Arachis hypogaea HOM05D000115 ORTHO05D003511 8.7e-14 81.3 58 65.5
BraA09t36494Z Brassica rapa HOM05D000115 ORTHO05D003511 8.7e-14 81.3 62 58.1
A06p30490 Brassica napus HOM05D000115 ORTHO05D003511 1.1e-13 80.9 62 58.1
BraA06t25998Z Brassica rapa HOM05D000115 ORTHO05D003511 1.1e-13 80.9 62 58.1
PSO017G4389 Papaver somniferum HOM05D000115 ORTHO05D003511 1.1e-13 80.9 59 62.7
BcaNung04638 Brassica carinata HOM05D000115 ORTHO05D003511 1.5e-13 80.5 62 56.5
BolC9t53866H Brassica oleracea HOM05D000115 ORTHO05D003511 1.5e-13 80.5 62 56.5
SHI21148 Sapria himalayana HOM05D000115 ORTHO05D003511 1.5e-13 80.5 59 57.6
Potri.011G145300 Populus trichocarpa HOM05D000115 ORTHO05D003511 2.5e-13 79.7 58 62.1
unitig_0.g2634 Utricularia gibba HOM05D000115 ORTHO05D003511 4.3e-13 79.0 54 63.0
C09p09550 Brassica napus HOM05D000115 ORTHO05D003511 5.6e-13 78.6 62 56.5
ATR0605G387 Amborella trichopoda HOM05D000115 ORTHO05D003511 7.4e-13 78.2 58 60.3
FvH4_1g09700 Fragaria vesca HOM05D000115 ORTHO05D003511 7.4e-13 78.2 49 69.4
CDE07G1148 Ceratophyllum demersum HOM05D000115 ORTHO05D003511 9.6e-13 77.8 58 60.3
Pp3c15_19370 Physcomitrium patens HOM05D000115 ORTHO05D003511 9.6e-13 77.8 55 65.5
Pp3c9_19490 Physcomitrium patens HOM05D000115 ORTHO05D003511 1.3e-12 77.4 57 63.2
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 3.6e-12 75.9 58 63.8
HPP92_015729 Vanilla planifolia HOM05D000115 ORTHO05D003511 4.8e-12 75.5 58 58.6
Haze_23581 Corylus avellana HOM05D000115 ORTHO05D003511 1.8e-11 73.6 125 37.6
MD06G1225000 Malus domestica HOM05D000115 ORTHO05D003511 1.8e-11 73.6 54 61.1
Mapoly0002s0045 Marchantia polymorpha HOM05D000115 ORTHO05D003511 1.8e-11 73.6 53 60.4
SMO331G0051 Selaginella moellendorffii HOM05D000115 ORTHO05D003511 2.4e-11 73.2 55 61.8
SMO331G0044 Selaginella moellendorffii HOM05D000115 ORTHO05D003511 6.9e-11 71.6 55 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4561 Anthoceros agrestis HOM05D000115 ORTHO05D003511 1.5e-10 70.5 55 54.5
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 5.8e-10 68.6 57 57.9
BcaC01g02638 Brassica carinata HOM05D000115 ORTHO05D003511 3.8e-09 65.9 48 60.4
C03p62570 Brassica napus HOM05D000115 ORTHO05D003511 8.4e-09 64.7 48 60.4
BolC3t18515H Brassica oleracea HOM05D000115 ORTHO05D003511 8.4e-09 64.7 48 60.4
Prupe.5G202700 Prunus persica HOM05D000115 ORTHO05D003511 4.2e-08 62.4 48 58.3
vmacro07498 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.2e-07 60.8 68 47.1
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 2.7e-07 59.7 79 36.7
vmacro11356 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 2.7e-07 59.7 36 75.0
Sc16g0004370 Simmondsia chinensis HOM05D000115 ORTHO05D003511 4.6e-07 58.9 36 75.0
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 1.3e-06 57.4 82 37.8
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 1.3e-06 57.4 79 38.0
vmacro14985 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 1.8e-06 57.0 67 46.3
Aqoxy6G03027 Aquilegia oxysepala HOM05D000115 ORTHO05D003511 2.3e-06 56.6 38 71.1
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 3.9e-06 55.8 45 51.1
HanXRQChr02g0055091 Helianthus annuus HOM05D000115 ORTHO05D003511 3.9e-06 55.8 36 72.2
BcaNung04633 Brassica carinata HOM05D000115 ORTHO05D003511 6.7e-06 55.1 71 39.4
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 8.7e-06 54.7 45 53.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 8.7e-06 54.7 66 45.5


User provided reference genes

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