Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.6e-171 604.4 348 100.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.2e-112 410.6 356 64.3
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.8e-108 396.7 386 59.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.7e-104 382.9 362 68.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-103 380.2 363 68.3
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.1e-93 346.7 359 61.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-90 336.7 372 61.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.4e-89 333.2 359 53.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.2e-88 330.9 388 55.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-88 330.9 372 58.9
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.5e-88 329.3 357 53.8
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 3.0e-87 326.2 347 52.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 5.1e-87 325.5 353 53.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-86 323.9 372 58.3
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 9.5e-86 321.2 358 60.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.0e-84 315.8 360 53.9
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.0e-84 315.8 354 60.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.8e-84 315.1 350 60.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.2e-83 314.3 360 53.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-83 314.3 357 53.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.6e-83 313.2 345 53.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 8.4e-82 308.1 368 51.4
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.1e-81 307.8 346 56.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.9e-81 307.0 357 52.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.4e-81 306.6 377 55.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-81 306.6 368 51.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.2e-81 306.2 368 51.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.1e-81 305.1 359 56.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.1e-80 303.5 358 49.4
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.7e-80 303.1 346 52.3
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.7e-80 303.1 380 47.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 5.1e-79 298.9 346 54.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.7e-77 292.4 360 55.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 8.9e-76 288.1 372 56.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.9e-73 280.4 350 50.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.9e-73 280.4 406 47.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.3e-73 278.1 369 51.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-72 277.7 350 50.6
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.6e-72 275.8 352 47.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.6e-72 275.8 358 47.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-71 274.2 352 47.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.0e-71 273.1 368 46.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.7e-71 271.6 358 47.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.5e-70 270.8 407 44.5
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-70 270.4 357 46.5
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.3e-69 267.7 387 43.7
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.6e-69 267.3 358 48.9
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.4e-68 264.2 369 45.8
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 6.9e-68 261.9 356 46.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.0e-68 261.5 360 45.8
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.0e-68 261.5 357 45.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.2e-67 261.2 393 42.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.6e-64 249.2 351 45.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 6.0e-64 248.8 365 49.9
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.3e-63 246.9 364 44.8
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.1e-62 244.6 375 51.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.3e-62 243.0 315 51.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.8e-60 237.3 396 40.4
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.6e-59 231.9 352 43.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.3e-58 231.1 345 41.4
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.3e-58 231.1 349 41.8
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.4e-57 226.9 350 43.7
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.2e-57 226.5 378 46.3
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.3e-55 220.3 306 45.4
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.3e-55 220.3 306 45.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.0e-55 219.9 353 40.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.1e-53 211.8 372 38.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.4e-52 211.1 363 39.9
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.8e-52 210.7 351 38.7
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.0e-52 209.5 356 41.3
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.0e-52 209.5 377 40.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 4.0e-52 209.5 352 41.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 6.9e-52 208.8 353 39.7
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.9e-52 208.8 351 39.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.9e-52 208.8 366 39.3
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.5e-51 207.6 368 47.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.2e-50 203.8 377 39.8
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 8.4e-50 201.8 356 40.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.5e-48 196.4 361 35.7
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.0e-48 195.7 374 39.6
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 7.9e-48 195.3 388 37.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.0e-47 194.9 354 37.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-47 194.5 358 39.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.3e-47 193.7 349 38.1
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.7e-47 191.8 357 39.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.1e-46 191.4 344 41.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-46 190.7 373 45.8
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.6e-46 188.3 355 40.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.3e-45 185.7 354 37.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.4e-44 184.5 352 37.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-44 184.5 366 39.9
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.6e-43 180.3 350 36.3
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.9e-43 179.1 375 37.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.9e-43 179.1 387 36.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.7e-42 177.6 359 37.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 3.8e-42 176.4 132 67.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.0e-42 176.0 345 37.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.5e-42 175.6 352 36.9
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.5e-42 175.3 362 37.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.9e-41 174.1 357 36.1
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.5e-41 172.6 351 37.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.3e-41 171.8 349 35.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.3e-41 171.8 353 38.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.2e-40 171.4 361 36.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.1e-40 170.6 127 71.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.6e-40 169.9 354 37.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.6e-40 169.5 354 37.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.6e-40 169.5 354 37.6
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.6e-40 169.5 167 58.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.3e-39 167.2 344 36.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 5.1e-39 166.0 349 38.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.5e-38 164.5 343 37.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.9e-38 164.1 348 38.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.5e-38 163.7 357 37.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.7e-38 162.5 378 34.4
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.3e-37 161.4 165 53.9
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.8e-37 160.2 151 53.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 4.8e-37 159.5 351 36.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 8.2e-37 158.7 348 35.9
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.1e-36 156.8 353 38.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.1e-36 156.4 143 58.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.1e-36 156.4 143 58.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-35 154.8 143 58.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-35 154.8 143 58.0
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 4.5e-35 152.9 163 51.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 4.5e-35 152.9 143 57.3
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-34 151.0 348 33.9
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.2e-34 150.6 346 35.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-34 150.2 349 38.1
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.1e-33 148.3 345 38.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 7.2e-33 145.6 159 49.7
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.2e-32 144.8 308 35.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.6e-32 144.4 308 35.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 7.9e-32 142.1 164 51.8
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 7.9e-32 142.1 164 51.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.7e-30 136.0 391 32.7
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 5.7e-30 136.0 433 36.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.2e-29 134.0 106 67.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.2e-29 134.0 94 67.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-28 131.3 103 67.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-28 131.3 103 67.0
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-28 131.0 478 29.1
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.3e-28 129.4 135 56.3
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 6.9e-28 129.0 352 33.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 6.9e-28 129.0 352 33.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 6.9e-28 129.0 352 33.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 6.9e-28 129.0 146 52.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 9.1e-28 128.6 125 58.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.5e-27 126.3 109 56.9
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 5.9e-27 125.9 136 52.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 7.7e-27 125.6 111 62.2
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.2e-25 119.8 72 86.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 4.2e-25 119.8 171 46.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.2e-24 118.2 105 53.3
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.6e-24 116.7 72 81.9
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.4e-23 114.8 166 44.6
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.0e-23 113.6 355 30.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.9e-23 113.2 178 42.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.6e-22 110.5 416 26.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.7e-22 109.4 174 42.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 9.7e-22 108.6 108 55.6
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.8e-21 106.3 171 35.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 8.5e-18 95.5 349 26.9
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.7e-16 89.7 171 33.9
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 6.1e-16 89.4 155 38.1
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.0e-16 89.0 114 43.9
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 4.4e-14 83.2 94 46.8
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 5.7e-14 82.8 94 45.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-13 81.6 97 45.4
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-13 81.6 94 46.8
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.0e-11 74.3 42 88.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.4e-07 61.6 99 36.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.2e-06 58.5 168 31.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 4.4e-06 56.6 151 29.1
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.5e-06 55.8 64 43.8
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 7.5e-06 55.8 86 43.0
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 9.8e-06 55.5 101 35.6


User provided reference genes

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