Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 6.5e-149 530.8 285 100.0
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 7.0e-103 377.9 282 73.8
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 4.9e-96 355.1 285 67.0
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 9.2e-95 350.9 284 65.5
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.3e-92 342.0 285 64.9
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 1.4e-90 337.0 285 62.8
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.2e-89 334.0 285 63.9
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 3.4e-89 332.4 285 66.7
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.4e-89 332.4 284 64.1
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 1.3e-88 330.5 277 65.7
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.9e-87 326.6 284 64.4
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 8.6e-85 317.8 282 61.3
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 9.5e-84 314.3 283 61.5
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 6.2e-83 311.6 282 61.7
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 6.2e-83 311.6 290 59.7
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 3.4e-81 305.8 275 62.9
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 2.9e-80 302.8 283 58.0
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 8.4e-80 301.2 279 59.1
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 9.2e-79 297.7 291 57.7
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 2.1e-78 296.6 270 64.8
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 9.6e-76 287.7 263 59.7
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.6e-75 287.0 287 59.2
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 3.4e-73 279.3 277 56.0
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 4.4e-73 278.9 282 57.1
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 9.9e-73 277.7 277 55.6
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 2.9e-72 276.2 286 53.8
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 4.9e-72 275.4 279 53.4
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 6.4e-72 275.0 282 53.5
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 7.1e-71 271.6 281 53.4
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.2e-70 270.8 279 55.9
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 1.6e-70 270.4 285 53.0
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 2.1e-70 270.0 333 48.0
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 7.8e-70 268.1 279 56.3
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 8.7e-69 264.6 278 53.6
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 2.5e-68 263.1 278 52.9
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.3e-68 262.3 263 54.4
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 2.8e-67 259.6 289 50.9
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 8.1e-67 258.1 272 54.8
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 1.8e-66 256.9 279 53.4
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 6.9e-66 255.0 324 47.5
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 1.5e-65 253.8 286 51.4
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 2.6e-65 253.1 281 53.0
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 4.5e-65 252.3 282 52.1
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 7.6e-65 251.5 356 46.6
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 1.3e-64 250.8 286 51.7
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 3.8e-64 249.2 282 51.4
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 8.4e-64 248.1 281 50.5
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 5.4e-63 245.4 281 49.8
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 3.5e-62 242.7 281 49.8
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 6.0e-62 241.9 284 48.6
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 1.8e-61 240.4 284 48.9
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 3.9e-61 239.2 296 47.6
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 5.1e-61 238.8 277 50.2
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 3.3e-60 236.1 282 49.3
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 7.4e-60 235.0 284 49.6
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 3.7e-59 232.6 306 45.8
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 8.1e-59 231.5 306 45.8
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 2.0e-57 226.9 267 49.1
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 3.4e-57 226.1 282 46.5
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.3e-56 224.2 267 48.7
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.7e-56 223.8 299 47.5
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.7e-56 223.8 299 47.5
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 2.9e-56 223.0 295 46.8
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 6.4e-56 221.9 223 59.6
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 1.1e-55 221.1 279 48.7
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.9e-55 220.3 163 71.2
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.1e-54 216.9 223 58.3
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 3.5e-54 216.1 282 47.5
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 1.8e-53 213.8 331 42.0
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 3.9e-53 212.6 311 43.7
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.9e-53 212.6 209 58.9
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.5e-52 210.7 279 45.2
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 2.0e-49 200.3 318 40.9
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 4.2e-47 192.6 284 44.0
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.8e-45 187.2 208 56.2
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 8.7e-45 184.9 164 62.8
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 4.8e-43 179.1 285 40.7
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 1.4e-42 177.6 249 41.8
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.2e-41 174.5 340 39.4
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 2.2e-40 170.2 247 43.7
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 3.8e-40 169.5 208 49.5
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 6.5e-40 168.7 279 37.6
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 9.4e-39 164.9 130 68.5
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.2e-38 164.5 233 42.5
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 3.6e-38 162.9 128 69.5
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 3.9e-37 159.5 128 67.2
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 6.7e-37 158.7 279 36.9
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 4.3e-36 156.0 282 38.7
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 1.4e-34 151.0 144 57.6
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 4.1e-34 149.4 202 44.1
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 5.3e-34 149.1 264 40.9
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.5e-33 147.5 142 62.0
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 3.8e-32 142.9 262 38.9
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 6.5e-32 142.1 194 44.8
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 2.5e-31 140.2 283 36.4
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 7.2e-31 138.7 127 55.1
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 7.9e-30 135.2 146 57.5
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 1.0e-29 134.8 203 44.3
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 3.9e-29 132.9 235 36.2
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 1.1e-26 124.8 114 57.0
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 5.3e-26 122.5 191 46.1
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 7.0e-26 122.1 111 53.2
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 1.5e-25 120.9 193 40.4
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 2.6e-25 120.2 136 47.8
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 4.5e-25 119.4 145 46.2
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 2.5e-23 113.6 116 50.0
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 6.1e-22 109.0 103 56.3
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 8.8e-21 105.1 100 54.0
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.3e-19 101.3 284 29.6
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 2.2e-19 100.5 101 56.4
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 5.3e-18 95.9 85 57.6
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 5.9e-17 92.4 80 63.8
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 1.2e-12 78.2 63 65.1
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-12 77.8 57 61.4
Duzib116G0864 Durio zibethinus HOM05D006511 ORTHO05D007567 3.4e-12 76.6 127 39.4
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 7.5e-12 75.5 55 74.5
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 6.5e-08 62.4 48 68.8
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.1e-07 61.6 56 53.6
Lsat_1_v5_gn_0_19000 Lactuca sativa HOM05D006511 ORTHO05D007567 1.9e-07 60.8 118 33.9
CSS0043606 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 3.6e-06 56.6 71 45.1
CSS0011431 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 4.7e-06 56.2 72 43.1
CSS0043730 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 4.7e-06 56.2 72 43.1


User provided reference genes

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