Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.3e-196 688.7 345 100.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 2.5e-131 472.6 351 70.4
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 3.7e-130 468.8 332 70.8
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 6.9e-129 464.5 325 71.1
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 2.0e-128 463.0 347 70.3
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 7.6e-128 461.1 347 69.5
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.9e-127 459.1 350 68.6
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 5.0e-127 458.4 304 75.0
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 5.5e-126 454.9 350 68.6
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 3.6e-125 452.2 354 66.1
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 6.1e-125 451.4 347 66.9
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 5.1e-124 448.4 338 66.6
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 6.7e-124 448.0 328 68.3
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 2.5e-123 446.0 357 64.4
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 6.3e-122 441.4 347 66.9
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.8e-121 439.9 344 66.6
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 1.2e-120 437.2 341 63.6
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 1.3e-119 433.7 347 65.1
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.8e-119 432.2 338 66.3
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.1e-118 430.6 323 65.9
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.4e-118 430.3 348 64.9
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.4e-118 430.3 326 65.6
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.4e-118 430.3 339 65.5
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 2.5e-118 429.5 317 66.6
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 3.2e-118 429.1 345 64.6
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 2.1e-117 426.4 339 63.1
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.7e-117 426.0 332 65.4
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 6.1e-117 424.9 333 65.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 1.0e-116 424.1 324 65.7
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 1.8e-116 423.3 343 64.7
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 6.7e-116 421.4 341 63.6
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.5e-115 420.2 343 60.1
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 3.3e-115 419.1 325 65.2
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 5.7e-115 418.3 324 62.0
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 9.7e-115 417.5 323 65.0
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 1.3e-114 417.2 326 63.8
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 4.1e-113 412.1 325 64.6
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 1.2e-112 410.6 350 62.6
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 1.5e-112 410.2 339 62.2
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 7.2e-110 401.4 345 58.8
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 9.4e-110 401.0 334 60.2
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.2e-109 400.6 306 64.1
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.6e-109 400.2 290 70.3
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.6e-109 400.2 347 58.2
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.1e-109 399.8 311 63.0
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 2.7e-109 399.4 347 58.8
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 3.6e-109 399.1 347 58.5
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 6.7e-108 394.8 342 58.5
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.7e-108 394.8 290 67.9
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.1e-107 394.0 342 58.2
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 1.5e-107 393.7 341 58.1
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 2.0e-107 393.3 342 58.2
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 2.0e-107 393.3 344 58.4
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 4.4e-107 392.1 340 59.7
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 4.4e-107 392.1 347 57.1
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 7.4e-107 391.3 347 57.6
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.4e-105 386.3 332 59.3
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 5.3e-105 385.2 317 60.6
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 7.0e-105 384.8 289 67.1
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.0e-105 384.8 343 57.1
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 3.5e-104 382.5 317 58.7
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 5.9e-104 381.7 343 56.0
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 2.9e-103 379.4 335 58.2
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 8.5e-103 377.9 335 57.6
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.5e-102 377.1 335 57.9
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 3.6e-101 372.5 380 52.4
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.7e-101 372.1 315 61.9
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 6.1e-101 371.7 322 57.5
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 1.4e-100 370.5 336 59.8
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 2.8e-98 362.8 314 60.8
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.6e-96 357.1 323 55.4
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 4.5e-96 355.5 289 64.0
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 6.5e-95 351.7 300 62.7
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 2.7e-93 346.3 327 52.6
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.0e-92 344.4 207 82.1
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 5.7e-91 338.6 363 51.5
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 9.8e-91 337.8 344 53.8
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.5e-86 323.9 326 54.3
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 7.2e-86 321.6 209 75.6
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 4.0e-84 315.8 270 62.6
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 6.3e-82 308.5 205 73.2
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 1.5e-78 297.4 347 51.0
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 4.3e-78 295.8 205 69.3
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 8.0e-77 291.6 210 67.6
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.4e-76 290.8 208 70.7
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.8e-76 288.5 291 55.7
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 4.7e-69 265.8 338 39.6
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 3.7e-66 256.1 263 53.6
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 9.5e-62 241.5 357 45.9
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.7e-58 230.7 304 46.7
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.2e-56 224.6 217 57.6
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 7.3e-54 215.3 312 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 2.0e-51 207.2 345 38.8
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 3.5e-48 196.4 122 74.6
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 3.5e-48 196.4 207 49.8
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 9.9e-43 178.3 126 66.7
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.0e-39 168.3 86 97.7
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.3e-39 167.9 112 75.0
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 3.9e-39 166.4 97 82.5
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 9.0e-36 155.2 314 33.1
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.2e-35 154.8 127 63.8
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 3.4e-35 153.3 100 65.0
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 4.5e-35 152.9 92 80.4
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 7.9e-32 142.1 100 60.0
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 1.9e-30 137.5 81 79.0
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 4.3e-30 136.3 80 67.5
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.4e-25 120.6 89 69.7
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.1e-25 119.0 89 68.5
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 2.1e-24 117.5 162 34.6
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 3.0e-23 113.6 202 39.6
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 9.0e-20 102.1 80 61.2
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.4e-17 94.7 309 25.2
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.8e-13 80.5 151 37.7
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.8e-13 80.5 151 37.7
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-12 78.2 151 37.1
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.9e-11 72.8 41 87.8
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 1.7e-10 71.2 135 36.3
MBI14_g30460_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D014525 3.0e-07 60.5 47 70.2
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 1.9e-06 57.8 46 60.9


User provided reference genes

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