Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 3.7e-70 268.1 134 100.0
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 3.8e-51 204.9 147 76.9
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 9.5e-42 173.7 147 68.0
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 2.8e-41 172.2 147 67.3
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 7.8e-36 154.1 124 71.0
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 6.6e-35 151.0 153 61.4
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.9e-34 149.4 116 70.7
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 1.9e-34 149.4 147 61.2
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 8.0e-33 144.1 148 59.5
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 8.0e-33 144.1 148 59.5
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.4e-32 143.3 146 60.3
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 6.8e-32 141.0 148 58.8
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 5.8e-31 137.9 133 60.2
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 2.9e-30 135.6 142 57.0
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 4.9e-30 134.8 140 58.6
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.9e-30 134.8 133 60.9
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 1.1e-29 133.7 142 56.3
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 1.1e-29 133.7 142 56.3
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 2.4e-29 132.5 142 56.3
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 5.4e-29 131.3 140 56.4
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 1.2e-28 130.2 140 57.9
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.2e-28 130.2 138 55.8
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.2e-28 130.2 138 55.8
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 1.6e-28 129.8 140 55.7
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 1.6e-28 129.8 138 55.8
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 2.0e-28 129.4 144 54.9
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.7e-28 129.0 145 56.6
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 3.5e-28 128.6 137 54.7
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.0e-27 127.1 145 53.8
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.0e-27 127.1 139 56.8
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.0e-27 127.1 139 56.8
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.3e-27 126.7 138 57.2
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.3e-27 126.7 145 55.9
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 1.7e-27 126.3 147 53.1
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 3.0e-27 125.6 141 54.6
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 3.0e-27 125.6 139 59.0
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 5.0e-27 124.8 141 56.0
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 6.6e-27 124.4 140 55.0
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 4.3e-26 121.7 144 52.1
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.2e-25 120.2 141 54.6
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 8.1e-25 117.5 139 52.5
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 1.1e-24 117.1 139 56.8
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 1.8e-24 116.3 142 50.0
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 5.2e-24 114.8 142 52.8
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.2e-23 113.6 143 51.0
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 3.4e-23 112.1 140 50.0
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 9.8e-23 110.5 145 50.3
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.3e-22 110.2 141 51.8
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 1.7e-22 109.8 143 51.7
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 2.2e-22 109.4 138 52.9
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 2.9e-22 109.0 145 50.3
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 2.9e-22 109.0 138 52.2
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 3.7e-22 108.6 141 52.5
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 8.3e-22 107.5 144 49.3
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.4e-21 106.7 144 48.6
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 3.2e-21 105.5 148 46.6
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 4.1e-21 105.1 147 47.6
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 7.1e-21 104.4 143 48.3
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 9.2e-21 104.0 140 50.0
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 1.2e-20 103.6 143 49.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 1.2e-20 103.6 144 45.8
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 1.6e-20 103.2 137 46.7
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 2.1e-20 102.8 147 46.9
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 2.1e-20 102.8 137 48.2
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 2.1e-20 102.8 147 48.3
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 4.6e-20 101.7 138 50.0
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 6.0e-20 101.3 143 48.3
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 6.0e-20 101.3 144 47.2
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 6.0e-20 101.3 139 49.6
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 7.8e-20 100.9 141 50.4
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 1.0e-19 100.5 143 49.7
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 1.3e-19 100.1 143 48.3
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 2.3e-19 99.4 138 47.8
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 3.0e-19 99.0 141 48.2
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 3.9e-19 98.6 137 48.2
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 5.1e-19 98.2 138 47.1
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 8.6e-19 97.4 145 46.2
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 1.1e-18 97.1 138 46.4
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.9e-18 96.3 119 52.9
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 2.5e-18 95.9 147 46.3
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 7.3e-18 94.4 158 42.4
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 7.3e-18 94.4 138 44.2
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 7.3e-18 94.4 148 45.3
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 1.6e-17 93.2 142 45.1
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 2.1e-17 92.8 137 47.4
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 2.1e-17 92.8 68 75.0
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 3.6e-17 92.0 141 44.0
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 3.6e-17 92.0 143 43.4
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 6.2e-17 91.3 138 44.9
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 6.2e-17 91.3 134 47.8
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 1.4e-16 90.1 144 43.1
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 1.8e-16 89.7 143 45.5
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 2.3e-16 89.4 139 45.3
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 5.8e-15 84.7 140 45.0
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 1.7e-14 83.2 141 43.3
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 2.9e-14 82.4 139 43.9
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 3.2e-13 79.0 93 53.8
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 6.0e-12 74.7 133 38.3
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.8e-12 74.3 59 64.4
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.3e-11 72.8 60 65.0
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 1.5e-10 70.1 101 50.5
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 9.6e-10 67.4 139 34.5
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 8.1e-09 64.3 130 35.4
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 1.4e-08 63.5 90 46.7
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 8.9e-08 60.8 40 80.0
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 8.9e-08 60.8 132 37.1
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 2.0e-07 59.7 53 62.3
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.6e-07 59.3 124 38.7
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 5.8e-07 58.2 50 64.0
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.7e-06 56.6 60 48.3
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 8.4e-06 54.3 88 43.2


User provided reference genes

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