Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.0e-173 613.6 374 100.0
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.0e-118 429.9 384 71.9
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.3e-117 427.2 307 75.9
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.8e-114 416.8 256 81.6
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.0e-113 413.3 259 82.2
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 7.5e-113 411.4 270 80.7
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 7.5e-113 411.4 364 65.9
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 4.9e-112 408.7 256 80.5
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 8.3e-112 407.9 350 67.1
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.4e-111 407.1 260 80.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.4e-111 407.1 260 80.0
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.4e-111 407.1 339 66.7
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.4e-111 407.1 257 79.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 5.4e-111 405.2 351 65.8
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 5.4e-111 405.2 345 65.2
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 7.0e-111 404.8 259 79.9
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.2e-110 404.1 364 63.7
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.6e-110 403.7 344 65.1
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.1e-110 403.3 342 66.4
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.1e-110 403.3 257 79.0
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.6e-110 402.1 261 80.1
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 4.6e-110 402.1 261 80.1
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 4.6e-110 402.1 385 61.0
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 6.0e-110 401.7 363 63.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.0e-109 401.0 249 82.7
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.7e-109 400.2 259 78.8
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.3e-109 399.8 257 80.5
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 8.6e-109 397.9 236 82.6
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.5e-108 396.4 265 76.6
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.3e-108 396.0 233 83.3
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 3.3e-108 396.0 248 81.9
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 3.3e-108 396.0 246 82.9
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 1.2e-107 394.0 377 68.2
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 3.6e-107 392.5 252 79.4
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.7e-107 392.1 353 62.3
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 6.2e-107 391.7 256 77.0
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.8e-106 390.2 258 76.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.8e-106 390.2 319 66.1
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.8e-106 390.2 342 63.2
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.8e-106 390.2 284 72.9
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 1.8e-106 390.2 284 72.9
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.3e-106 389.8 256 76.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-106 389.8 236 82.2
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 4.0e-106 389.0 348 62.6
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 5.2e-106 388.7 247 80.2
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 6.8e-106 388.3 259 76.1
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 8.9e-106 387.9 256 77.3
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 8.9e-106 387.9 258 76.4
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 8.9e-106 387.9 308 66.6
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 8.9e-106 387.9 307 65.8
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 8.9e-106 387.9 358 62.6
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.2e-105 387.5 256 76.2
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.2e-105 387.5 253 77.1
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.2e-105 387.5 348 62.4
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 1.2e-105 387.5 247 76.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.2e-105 387.5 245 81.2
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 2.0e-105 386.7 348 64.1
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.0e-105 386.7 245 79.6
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.0e-105 386.7 258 76.0
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-105 386.3 262 75.2
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.6e-105 386.3 240 78.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-105 385.6 262 74.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.4e-105 385.6 262 74.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.4e-105 385.6 262 74.8
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 5.8e-105 385.2 251 76.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 7.5e-105 384.8 258 75.2
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 7.5e-105 384.8 264 73.5
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.5e-105 384.8 253 77.1
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.7e-104 383.6 251 77.7
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 2.9e-104 382.9 350 61.7
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 3.7e-104 382.5 245 78.4
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 6.4e-104 381.7 258 76.0
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 8.3e-104 381.3 347 61.7
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 8.3e-104 381.3 347 62.0
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.1e-103 380.9 240 77.9
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.1e-103 380.9 260 73.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 1.4e-103 380.6 224 83.9
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.9e-103 380.2 261 74.7
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.9e-103 380.2 252 76.2
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.1e-103 379.0 264 74.2
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 4.1e-103 379.0 352 61.1
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.4e-103 378.6 252 75.4
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 7.1e-103 378.3 259 73.7
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.1e-102 376.7 328 63.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-102 376.3 260 73.5
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.7e-102 376.3 260 73.5
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.7e-102 376.3 225 82.7
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 3.5e-102 375.9 253 76.3
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 7.8e-102 374.8 265 71.7
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.3e-101 373.2 260 73.5
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.3e-101 373.2 247 76.1
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-101 373.2 248 73.0
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-99 367.5 236 76.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.6e-99 365.9 249 73.1
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.1e-98 364.4 236 76.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 5.2e-98 362.1 236 74.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 3.4e-97 359.4 227 77.1
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.4e-97 359.4 250 73.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.9e-96 356.3 215 80.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.9e-96 356.3 249 71.1
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 4.9e-96 355.5 240 73.3
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.4e-95 353.2 348 57.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.7e-94 349.7 226 77.4
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.0e-93 347.8 214 79.0
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.9e-93 345.9 243 72.0
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 5.3e-90 335.5 189 86.2
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 9.9e-89 331.3 238 67.2
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.1e-86 323.6 225 72.4
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 6.0e-86 322.0 178 89.3
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 7.8e-86 321.6 179 89.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-84 317.8 260 65.4
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.1e-82 309.7 179 86.6
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 5.3e-82 308.9 230 65.7
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.5e-81 307.4 226 67.3
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.9e-80 302.4 285 63.9
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.1e-79 298.5 226 65.0
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-78 297.7 260 62.3
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.0e-77 294.7 213 72.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.1e-74 284.6 223 64.6
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.5e-73 280.8 285 56.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.4e-73 279.6 246 57.3
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.9e-73 278.1 247 56.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.3e-69 266.9 165 81.8
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.9e-64 250.0 149 80.5
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.4e-63 247.7 131 91.6
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 5.5e-63 245.7 147 81.6
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.6e-54 216.5 129 79.1
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.4e-50 203.8 214 47.2
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 6.9e-50 202.2 214 46.7
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.2e-49 201.4 339 42.8
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.5e-49 201.1 241 51.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 4.5e-49 199.5 258 49.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-44 184.1 102 85.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-44 184.1 102 86.3
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 4.4e-44 183.0 102 84.3
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-43 181.0 102 84.3
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-43 181.0 102 84.3
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-43 180.6 102 83.3
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.3e-43 179.1 102 83.3
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.3e-43 179.1 102 83.3
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.8e-42 177.6 102 82.4
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-42 177.6 102 82.4
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-42 177.2 102 82.4
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 4.5e-41 172.9 249 43.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 7.2e-39 165.6 234 40.2
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 9.4e-39 165.2 255 37.3
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.0e-37 161.8 163 58.9
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 7.4e-36 155.6 91 83.5
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.0e-33 147.5 202 51.5
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 5.5e-31 139.4 102 68.6
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 7.2e-31 139.0 74 93.2
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 7.2e-31 139.0 74 93.2
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 7.2e-31 139.0 74 93.2
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.1e-30 137.5 118 63.6
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 7.5e-28 129.0 104 67.3
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.7e-27 126.7 109 63.3
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.8e-26 124.4 88 71.6
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 9.1e-26 122.1 94 66.0
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.3e-21 107.5 63 81.0
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.2e-20 105.1 55 92.7
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.2e-20 105.1 82 65.9
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 2.6e-20 104.0 87 57.5
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 2.2e-19 100.9 57 78.9
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.8e-18 97.8 179 31.3
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 3.3e-15 87.0 50 80.0
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.8e-14 84.0 44 93.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-13 82.0 71 62.0
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 7.5e-12 75.9 47 80.9


User provided reference genes

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