Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 4.3e-92 341.3 168 100.0
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 1.0e-32 144.1 136 62.5
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 4.2e-31 138.7 106 68.9
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 1.8e-29 133.3 106 65.1
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 1.2e-25 120.6 103 63.1
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 2.2e-24 116.3 111 59.5
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 3.2e-23 112.5 97 60.8
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 5.5e-23 111.7 97 60.8
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 5.5e-23 111.7 97 59.8
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 2.7e-22 109.4 111 54.1
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 3.6e-22 109.0 108 56.5
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 8.0e-22 107.8 121 52.1
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 1.0e-21 107.5 98 56.1
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 1.8e-21 106.7 100 61.0
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 6.8e-21 104.8 134 45.5
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 1.2e-20 104.0 159 42.8
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 1.5e-20 103.6 157 48.4
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 2.0e-20 103.2 98 61.2
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 4.4e-20 102.1 79 68.4
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 7.5e-20 101.3 97 54.6
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 9.8e-20 100.9 113 54.9
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 1.3e-19 100.5 118 55.9
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 1.7e-19 100.1 120 51.7
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.2e-19 99.8 97 58.8
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 3.7e-19 99.0 123 51.2
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 4.9e-19 98.6 122 48.4
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 6.3e-19 98.2 95 57.9
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 6.3e-19 98.2 90 55.6
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 1.4e-18 97.1 97 53.6
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 1.8e-18 96.7 155 43.9
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 1.8e-18 96.7 103 52.4
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 7.0e-18 94.7 90 56.7
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 7.0e-18 94.7 125 48.0
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 7.0e-18 94.7 78 64.1
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 1.2e-17 94.0 82 59.8
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.0e-17 93.2 102 52.9
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 2.7e-17 92.8 112 46.4
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 4.5e-17 92.0 83 57.8
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 7.7e-17 91.3 76 61.8
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.3e-16 90.5 66 66.7
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 1.3e-16 90.5 102 52.9
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 1.7e-16 90.1 83 60.2
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 2.3e-16 89.7 73 61.6
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 2.9e-16 89.4 112 45.5
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 2.9e-16 89.4 74 55.4
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 3.8e-16 89.0 63 68.3
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 3.8e-16 89.0 58 72.4
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 3.8e-16 89.0 98 51.0
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 5.0e-16 88.6 113 45.1
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 5.0e-16 88.6 112 43.8
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 5.0e-16 88.6 102 52.0
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 5.0e-16 88.6 98 53.1
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 6.6e-16 88.2 66 63.6
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 8.6e-16 87.8 112 44.6
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 8.6e-16 87.8 70 61.4
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 1.1e-15 87.4 88 59.1
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 1.5e-15 87.0 120 41.7
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 2.5e-15 86.3 70 60.0
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 2.5e-15 86.3 92 54.3
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 3.3e-15 85.9 66 63.6
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 3.3e-15 85.9 76 61.8
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 4.3e-15 85.5 116 43.1
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 5.6e-15 85.1 80 58.8
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 1.2e-14 84.0 71 57.7
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 1.2e-14 84.0 148 43.2
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 1.2e-14 84.0 107 44.9
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 1.6e-14 83.6 113 45.1
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 1.6e-14 83.6 58 69.0
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 2.1e-14 83.2 109 49.5
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 2.1e-14 83.2 147 40.1
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 2.8e-14 82.8 99 47.5
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 2.8e-14 82.8 99 47.5
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 3.6e-14 82.4 58 69.0
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 8.0e-14 81.3 116 41.4
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 1.0e-13 80.9 65 60.0
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 1.4e-13 80.5 97 47.4
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 3.0e-13 79.3 96 47.9
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 3.0e-13 79.3 74 58.1
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 4.0e-13 79.0 82 51.2
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 6.8e-13 78.2 85 52.9
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 5.7e-12 75.1 54 68.5
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 7.5e-12 74.7 89 47.2
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 2.2e-11 73.2 113 38.9
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 2.4e-10 69.7 108 40.7
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 5.4e-10 68.6 72 54.2
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 7.0e-10 68.2 54 61.1
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 1.3e-08 63.9 68 48.5
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 5.0e-08 62.0 146 34.2
Aqoxy4G03276 Aquilegia oxysepala HOM05D007683 ORTHO05D009703 5.6e-07 58.5 37 73.0
Os03g0334300 Oryza sativa ssp. japonica HOM05D007683 ORTHO05D009703 5.6e-07 58.5 46 60.9
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 7.3e-07 58.2 47 57.4


User provided reference genes

Program Settings