Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 0.0e+00 1199.5 601 100.0
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 3.4e-272 941.4 601 78.7
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 6.6e-268 927.2 626 76.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-250 869.8 601 72.5
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.0e-248 862.4 601 71.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 5.4e-246 854.4 601 72.0
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.5e-245 851.7 601 72.0
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.5e-245 851.7 601 70.7
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 7.8e-245 850.5 601 71.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.7e-244 849.4 602 70.8
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.5e-243 845.5 601 71.2
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 3.3e-243 845.1 600 70.7
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 3.6e-242 841.6 601 71.2
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.2e-241 837.8 600 70.8
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 5.8e-240 834.3 602 70.8
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.3e-239 833.2 602 70.8
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.8e-239 831.6 601 70.5
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 8.4e-239 830.5 604 69.7
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 8.4e-239 830.5 601 69.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.4e-238 829.7 603 69.5
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.1e-238 827.4 601 70.2
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.7e-237 825.5 603 69.2
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 6.0e-237 824.3 601 69.6
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.3e-236 823.2 602 69.1
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.7e-236 822.8 603 68.8
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 4.7e-234 814.7 635 66.0
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.2e-232 810.1 676 63.5
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 3.4e-232 808.5 601 69.6
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 4.4e-232 808.1 601 67.1
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 4.2e-230 801.6 605 68.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.4e-230 801.2 601 68.2
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.4e-230 801.2 602 67.4
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.1e-230 800.8 602 66.4
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.0e-228 797.0 602 68.6
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.0e-228 797.0 506 80.0
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.8e-226 788.9 600 67.5
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 4.8e-226 788.1 599 65.6
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 6.2e-226 787.7 602 66.6
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 6.2e-226 787.7 602 66.4
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 6.2e-226 787.7 607 66.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.1e-225 785.4 601 67.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 9.0e-225 783.9 621 64.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 7.6e-224 780.8 601 65.1
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.9e-223 778.9 601 65.4
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.8e-223 778.5 600 66.2
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 6.4e-223 777.7 669 60.4
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 8.4e-223 777.3 600 65.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 2.4e-222 775.8 601 66.2
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.2e-222 775.4 599 65.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.4e-222 774.6 600 65.7
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 7.1e-222 774.2 604 64.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 9.3e-222 773.9 601 64.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.6e-221 773.1 601 65.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.0e-220 770.4 601 65.2
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.3e-220 769.2 601 64.6
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.0e-220 768.8 608 65.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.9e-220 768.5 602 65.0
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 6.7e-220 767.7 600 65.0
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 4.3e-219 765.0 605 63.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.2e-216 756.9 601 64.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 4.5e-216 755.0 601 64.1
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 5.8e-216 754.6 601 62.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 9.9e-216 753.8 601 63.7
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.9e-212 741.9 601 62.4
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.1e-211 740.3 602 64.1
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.5e-211 740.0 602 62.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.5e-211 740.0 617 62.6
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.1e-210 734.2 561 67.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.1e-209 733.8 610 61.3
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.4e-209 733.4 608 62.8
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.0e-209 731.9 565 65.3
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 9.0e-209 730.7 601 62.4
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 9.0e-209 730.7 638 59.1
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 9.0e-209 730.7 613 61.0
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.7e-207 726.5 602 62.1
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.9e-207 725.7 601 62.4
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 8.4e-207 724.2 603 61.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.4e-206 723.4 607 61.0
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 4.2e-206 721.8 602 63.3
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 5.5e-206 721.5 610 59.8
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.6e-205 719.9 603 61.5
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 2.1e-205 719.5 603 62.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.0e-204 717.2 542 68.5
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.1e-204 714.9 603 62.7
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 6.7e-204 714.5 603 60.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 8.7e-204 714.1 601 61.9
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.5e-203 712.6 603 60.7
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 5.7e-203 711.4 603 60.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 2.4e-201 706.1 564 63.3
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.1e-201 705.7 603 60.2
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.1e-201 705.7 603 60.2
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 9.0e-201 704.1 602 60.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.5e-200 701.8 602 60.3
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.7e-199 699.9 601 60.7
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 4.8e-194 681.8 601 59.1
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.6e-192 676.0 584 61.3
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 5.9e-192 674.9 601 58.2
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.8e-178 629.4 607 54.4
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 5.0e-175 618.6 445 69.9
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.5e-174 617.1 607 54.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.6e-173 613.6 610 53.8
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.7e-173 612.1 471 68.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.4e-169 600.5 529 59.4
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 4.1e-169 599.0 529 59.0
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.5e-168 595.5 420 72.9
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 5.0e-167 592.0 605 54.4
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 6.3e-162 575.1 629 49.6
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 8.3e-162 574.7 527 57.7
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 2.1e-157 560.1 604 48.3
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.0e-155 553.5 553 55.2
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.4e-153 546.6 601 48.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 7.1e-129 465.3 616 42.0
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 2.1e-128 463.8 370 63.0
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.4e-124 451.1 584 44.9
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 8.7e-119 431.8 279 77.4
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 3.4e-115 419.9 607 40.9
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.3e-111 407.9 620 38.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.1e-109 400.6 311 63.3
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.1e-105 388.3 604 39.6
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-104 384.8 302 66.2
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.6e-104 382.9 429 51.0
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 6.9e-100 369.0 631 38.5
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 3.5e-96 356.7 249 69.5
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.9e-90 337.0 465 45.2
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 6.3e-77 292.7 612 31.7
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.8e-74 283.5 250 58.4
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 4.2e-73 280.0 428 42.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 7.2e-65 252.7 289 48.8
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 8.8e-63 245.7 287 50.2
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.9e-57 228.0 166 69.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.7e-50 204.9 138 71.0
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.7e-50 204.9 291 44.0
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 5.2e-47 193.4 566 28.4
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 4.1e-44 183.7 390 35.1
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.7e-42 178.3 134 64.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 7.2e-41 172.9 127 68.5
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-38 165.2 137 59.1
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.0e-34 152.5 115 67.0
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.9e-26 124.0 900 22.4
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 5.6e-25 120.2 97 61.9
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.2e-22 112.5 147 41.5
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-22 112.5 196 34.2
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.2e-20 104.4 81 63.0
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 5.6e-17 93.6 75 60.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 4.9e-13 80.5 173 33.5
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 6.4e-13 80.1 173 33.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.9e-12 78.6 58 65.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 4.1e-12 77.4 42 81.0
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-11 75.5 104 39.4
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.1e-11 75.1 41 80.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 6.0e-11 73.6 41 80.5
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.0e-10 71.2 91 41.8
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 4.3e-09 67.4 51 64.7
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 8.1e-08 63.2 60 56.7


User provided reference genes

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