Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-175 619.4 310 100.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.2e-132 476.9 309 79.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-131 473.8 309 78.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.2e-124 450.3 310 76.5
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.5e-114 416.8 311 71.4
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.8e-113 411.8 321 68.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.4e-112 410.2 310 69.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 4.0e-112 408.7 309 70.2
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.2e-111 407.1 309 70.9
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 6.5e-110 401.4 283 72.1
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 8.4e-110 401.0 283 72.1
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.4e-110 401.0 311 69.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.9e-109 399.8 237 83.1
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.2e-109 399.1 311 69.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.2e-109 399.1 311 67.8
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 5.5e-109 398.3 236 83.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 7.1e-109 397.9 309 67.6
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 9.3e-109 397.5 309 67.6
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.1e-108 396.4 311 67.8
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.6e-108 395.2 237 83.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.0e-107 392.5 308 68.2
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.9e-107 392.1 311 68.2
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.9e-107 392.1 340 64.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.7e-107 391.3 311 68.2
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.5e-106 389.4 309 68.9
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.3e-106 389.0 313 67.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.8e-105 386.0 306 66.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 2.8e-105 386.0 308 66.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 8.2e-105 384.4 232 81.5
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.4e-104 383.6 310 68.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-104 383.3 297 67.3
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.1e-104 382.1 229 82.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.1e-104 382.1 302 64.6
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 9.0e-104 380.9 229 82.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.6e-103 379.4 283 67.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 4.5e-103 378.6 309 66.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.5e-103 378.6 235 80.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 5.9e-103 378.3 283 70.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.3e-102 377.1 309 65.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.7e-102 376.7 308 65.3
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-102 376.3 308 65.6
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.9e-102 375.9 270 71.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.8e-102 375.6 231 81.4
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.5e-102 374.8 306 66.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 8.5e-102 374.4 306 65.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 8.5e-102 374.4 302 63.6
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.1e-101 374.0 311 65.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.1e-101 374.0 307 67.1
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-101 373.6 308 64.9
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.9e-101 373.2 232 80.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.5e-101 372.9 297 66.7
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-101 372.5 308 64.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 4.2e-101 372.1 246 75.6
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.2e-101 372.1 231 80.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.2e-101 372.1 231 80.5
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.2e-100 370.5 229 81.2
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-100 369.8 231 78.8
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-100 369.0 230 79.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 4.6e-100 368.6 308 64.9
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.8e-99 366.7 231 79.2
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.3e-99 366.3 235 77.9
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.9e-99 365.5 229 78.2
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.9e-99 365.5 306 62.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.7e-99 364.8 232 78.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.1e-98 364.0 229 78.2
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 5.7e-98 361.7 230 77.8
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 9.7e-98 360.9 306 64.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.3e-97 360.5 242 74.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.7e-97 360.1 306 64.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.2e-97 359.8 311 62.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 4.8e-97 358.6 242 73.1
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 4.8e-97 358.6 229 79.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 6.3e-97 358.2 259 69.5
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 6.3e-97 358.2 259 69.5
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 6.3e-97 358.2 290 65.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.1e-96 357.5 308 61.7
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.4e-96 357.1 306 63.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 3.1e-96 355.9 232 75.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 5.3e-96 355.1 229 76.4
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 9.1e-96 354.4 306 62.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.6e-95 352.8 229 76.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.7e-95 351.3 308 61.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 7.7e-95 351.3 229 75.1
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-94 350.5 231 74.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.2e-94 349.7 310 60.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.2e-94 349.7 245 73.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.9e-94 349.4 223 77.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.8e-94 349.0 240 72.5
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 8.5e-94 347.8 229 74.2
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 8.5e-94 347.8 229 74.2
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 8.5e-94 347.8 229 74.2
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-93 347.4 229 74.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.2e-93 345.9 235 73.2
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-92 344.0 228 74.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.2e-92 344.0 228 74.6
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.1e-92 343.2 224 77.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 6.1e-92 341.7 234 73.5
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 6.1e-92 341.7 234 73.5
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.1e-92 341.7 308 61.7
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.3e-91 339.7 230 72.6
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.0e-91 339.3 232 72.8
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 5.1e-91 338.6 231 72.3
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.0e-90 336.7 292 61.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.6e-90 336.3 221 74.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.7e-90 335.1 231 71.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.3e-89 334.0 232 70.7
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 5.3e-88 328.6 203 79.8
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.2e-87 327.4 288 61.5
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.5e-87 325.5 230 73.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.9e-86 322.8 202 80.7
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 8.5e-86 321.2 202 77.7
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-85 320.9 309 58.3
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.6e-84 317.0 233 67.8
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.1e-84 316.6 199 78.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.3e-83 313.2 214 72.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.6e-82 309.7 234 65.8
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.6e-82 309.7 234 66.7
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.7e-81 305.8 191 80.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 7.0e-80 301.6 199 77.9
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-79 299.7 257 64.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 4.5e-79 298.9 199 74.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.9e-78 296.2 244 65.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.8e-78 295.8 234 67.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 7.2e-77 291.6 233 63.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-76 290.8 201 73.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-74 283.5 243 60.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 4.8e-73 278.9 199 69.3
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 5.9e-71 271.9 236 60.2
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.0e-70 271.2 231 61.0
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.5e-69 267.3 169 78.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 6.1e-68 261.9 229 59.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.0e-67 259.6 185 73.5
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 7.5e-66 255.0 150 84.0
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.0e-62 242.3 214 62.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 6.1e-60 235.3 230 52.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 2.3e-59 233.4 238 51.7
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-57 227.3 308 44.8
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-52 209.5 164 63.4
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 6.1e-52 208.8 229 52.8
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.9e-49 199.1 146 70.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.6e-47 192.6 147 68.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-45 188.0 147 68.0
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.8e-42 174.9 133 69.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.8e-36 156.8 160 55.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.8e-36 156.8 160 55.0
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.8e-36 156.8 158 57.0
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.6e-36 156.4 124 64.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.8e-35 152.1 117 70.1
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 9.5e-29 131.7 157 47.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.8e-27 125.6 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.6e-26 123.6 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.4e-26 123.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.4e-26 122.9 74 78.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 4.4e-26 122.9 74 79.7
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 5.4e-24 115.9 68 86.8
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.2e-24 115.2 72 80.6
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 3.3e-21 106.7 90 61.1
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 4.3e-21 106.3 192 33.9
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.8e-20 103.6 70 77.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 6.2e-20 102.4 66 81.8
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.4e-17 92.0 64 73.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.7e-14 84.3 67 68.7
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 6.6e-14 82.4 46 91.3
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.8e-11 74.3 104 48.1
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.1e-11 73.6 44 77.3
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.5e-10 71.2 44 72.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-10 71.2 64 57.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.4e-09 65.5 200 27.5
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 8.4e-09 65.5 62 53.2
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 6.0e-07 59.3 66 48.5
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 6.0e-07 59.3 66 48.5
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 7.9e-07 58.9 33 90.9


User provided reference genes

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