Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.5e-179 632.9 343 100.0
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.8e-87 325.9 343 63.8
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.1e-69 265.4 347 53.3
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.9e-64 248.8 322 55.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.9e-63 246.5 347 49.9
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 8.6e-55 218.4 343 49.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.2e-53 214.5 337 48.4
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.8e-53 213.4 338 45.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.3e-52 210.3 331 48.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 9.8e-51 204.9 335 46.6
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 2.9e-50 203.4 341 46.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.1e-49 201.4 332 47.3
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.2e-49 199.9 336 46.4
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.7e-48 196.8 330 45.2
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.5e-48 196.4 352 44.6
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.3e-47 194.5 331 44.7
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 5.0e-47 192.6 338 44.4
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.3e-46 189.9 362 43.9
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.3e-46 188.7 342 45.9
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 9.5e-46 188.3 352 44.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 6.2e-45 185.7 356 43.5
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.3e-44 183.7 349 43.3
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.2e-43 181.4 345 44.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.7e-42 177.6 341 43.7
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 8.3e-42 175.3 341 41.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.9e-41 174.1 356 40.2
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.6e-40 171.0 336 40.8
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 4.6e-40 169.5 371 38.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.0e-39 168.3 332 41.6
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 5.1e-39 166.0 333 42.3
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.9e-38 164.1 333 42.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.6e-37 161.0 344 41.3
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.3e-36 157.1 356 39.6
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.2e-36 156.0 310 41.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.2e-35 154.8 319 43.6
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 9.9e-35 151.8 358 39.1
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 3.7e-34 149.8 304 42.1
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 9.2e-33 145.2 334 39.2
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 6.0e-32 142.5 331 38.4
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.0e-31 140.2 341 36.4
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 5.1e-31 139.4 349 38.7
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.1e-30 138.3 351 36.5
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.5e-30 137.1 290 42.8
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 6.2e-29 132.5 265 40.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 8.1e-29 132.1 314 36.6
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.1e-29 132.1 236 39.8
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-28 131.3 315 38.7
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.2e-27 128.3 333 36.9
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.2e-27 128.3 322 37.9
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.4e-27 126.7 298 38.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 9.9e-27 125.2 325 36.6
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-26 124.8 294 38.8
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-26 124.8 312 38.5
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.2e-26 124.0 294 38.4
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.8e-26 123.2 358 33.5
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-26 122.5 295 35.9
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 6.4e-26 122.5 298 35.6
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-25 120.6 298 35.2
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 4.2e-25 119.8 300 37.0
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.2e-25 119.8 300 36.0
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 4.2e-25 119.8 294 38.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.4e-25 119.4 311 37.0
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 5.4e-25 119.4 311 37.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 5.4e-25 119.4 298 35.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.2e-24 118.2 301 35.9
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.2e-24 118.2 291 38.8
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.6e-24 117.9 300 36.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-24 117.9 218 40.8
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.1e-24 117.5 366 34.2
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.1e-24 117.5 307 37.8
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.6e-24 116.3 313 32.9
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 5.1e-23 112.8 233 38.2
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 6.6e-23 112.5 302 35.1
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.6e-23 112.5 323 34.4
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 6.6e-23 112.5 291 36.1
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-22 111.7 297 34.3
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 7.3e-22 109.0 297 34.3
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 9.6e-22 108.6 291 37.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-21 107.8 294 36.4
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-21 107.5 316 35.8
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.1e-21 107.5 291 36.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.6e-21 106.7 340 33.8
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 4.8e-21 106.3 293 36.2
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 6.2e-21 105.9 317 34.4
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 6.2e-21 105.9 251 35.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 8.1e-21 105.5 221 37.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-20 105.1 294 37.8
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.4e-20 104.8 300 35.0
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.8e-20 104.4 283 37.5
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.4e-20 104.0 313 37.7
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.1e-20 103.6 334 34.1
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.0e-20 102.1 311 37.6
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 9.0e-20 102.1 313 32.3
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-19 101.7 320 34.7
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.0e-19 100.9 299 34.1
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.4e-19 99.8 186 40.9
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 7.6e-19 99.0 334 36.8
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 2.2e-18 97.4 318 34.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.9e-18 96.3 290 33.8
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.9e-17 94.4 93 55.9
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.4e-17 94.0 330 34.2
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 3.2e-17 93.6 156 42.3
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.2e-17 93.2 279 34.8
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 3.5e-16 90.1 294 31.6
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 6.0e-16 89.4 334 32.0
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.0e-15 88.6 328 32.6
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.3e-15 88.2 292 30.8
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.7e-15 87.8 288 32.6
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.3e-15 87.4 206 35.9
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 8.7e-15 85.5 117 45.3
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.5e-14 84.7 231 35.9
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.9e-14 84.3 267 30.3
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 1.9e-14 84.3 362 30.1
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.5e-14 84.0 342 29.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.5e-14 84.0 322 33.2
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.6e-13 81.3 229 37.1
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-13 80.1 315 31.4
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 3.6e-13 80.1 315 31.4
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.4e-12 78.2 341 29.3
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 4.0e-12 76.6 186 40.9
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 4.0e-12 76.6 265 32.5
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.3e-12 76.3 311 28.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 6.9e-12 75.9 242 36.4
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 6.9e-12 75.9 266 34.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 4.5e-11 73.2 275 30.9
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.2e-10 70.9 209 32.5
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 4.9e-10 69.7 169 36.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 6.0e-08 62.8 79 49.4
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 7.9e-08 62.4 330 27.3


User provided reference genes

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