Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 3.1e-53 211.5 103 100.0
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-51 206.5 102 98.0
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.1e-48 194.9 102 92.2
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 8.9e-48 193.4 102 90.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.5e-47 192.6 102 92.2
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.0e-47 192.2 102 91.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.4e-47 191.4 101 90.1
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.4e-47 191.4 102 91.2
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 4.4e-47 191.0 101 91.1
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 5.8e-47 190.7 100 91.0
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 7.5e-47 190.3 101 89.1
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.5e-47 190.3 103 87.4
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.5e-47 190.3 103 87.4
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 9.8e-47 189.9 102 89.2
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.3e-46 189.5 102 88.2
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.3e-46 189.5 101 89.1
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.7e-46 189.1 101 90.1
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.7e-46 189.1 101 90.1
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.7e-46 189.1 101 90.1
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.7e-46 189.1 101 90.1
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.7e-46 189.1 101 90.1
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.2e-46 188.7 102 88.2
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 2.2e-46 188.7 102 88.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.7e-46 188.0 102 86.3
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.9e-46 187.6 101 89.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.9e-46 187.6 101 89.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.9e-46 187.6 101 89.1
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 4.9e-46 187.6 102 85.3
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 4.9e-46 187.6 101 89.1
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 4.9e-46 187.6 101 90.1
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 6.4e-46 187.2 101 89.1
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 6.4e-46 187.2 101 89.1
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 6.4e-46 187.2 101 89.1
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.1e-45 186.4 102 86.3
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.4e-45 186.0 101 88.1
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.4e-45 186.0 102 85.3
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.4e-45 186.0 102 85.3
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 88.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.9e-45 185.7 100 89.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.9e-45 185.7 102 86.3
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.9e-45 185.7 102 87.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.9e-45 185.7 101 87.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-45 185.3 101 89.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-45 185.3 97 91.8
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.4e-45 185.3 102 85.3
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 2.4e-45 185.3 102 85.3
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.4e-45 185.3 102 86.3
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.4e-45 185.3 101 86.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.1e-45 184.5 102 86.3
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 4.1e-45 184.5 102 86.3
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.1e-45 184.5 101 87.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.1e-45 184.5 100 88.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 4.1e-45 184.5 102 86.3
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 4.1e-45 184.5 101 86.1
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 5.4e-45 184.1 101 88.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.4e-45 184.1 102 86.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 7.0e-45 183.7 102 88.2
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 9.2e-45 183.3 102 85.3
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 9.2e-45 183.3 102 85.3
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 9.2e-45 183.3 102 85.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.2e-44 183.0 101 85.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.2e-44 183.0 102 84.3
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.6e-44 182.6 101 86.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.0e-44 182.2 101 86.1
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.7e-44 181.8 101 86.1
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.7e-44 181.8 102 86.3
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.7e-44 181.8 102 86.3
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.5e-44 181.4 102 85.3
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 4.6e-44 181.0 101 85.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 4.6e-44 181.0 103 83.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 6.0e-44 180.6 100 87.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 6.0e-44 180.6 102 86.3
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 7.8e-44 180.3 102 84.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.0e-43 179.9 101 85.1
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.0e-43 179.9 101 85.1
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.0e-43 179.9 101 84.2
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.3e-43 179.5 101 83.2
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.7e-43 179.1 100 86.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-43 178.7 101 84.2
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-43 178.7 101 84.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.3e-43 178.7 101 84.2
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 2.3e-43 178.7 101 84.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 2.3e-43 178.7 102 84.3
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.3e-43 178.7 99 87.9
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.0e-43 178.3 102 85.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 3.9e-43 177.9 102 84.3
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 3.9e-43 177.9 102 83.3
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.9e-43 177.9 101 83.2
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 5.0e-43 177.6 101 81.2
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 8.6e-43 176.8 101 83.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 8.6e-43 176.8 101 84.2
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-42 176.4 101 82.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-42 176.0 101 84.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.5e-42 176.0 101 84.2
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.9e-42 175.6 101 82.2
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.9e-42 175.6 101 82.2
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-42 174.1 101 81.2
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-42 174.1 101 81.2
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 5.6e-42 174.1 101 81.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.6e-42 174.1 102 79.4
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 5.6e-42 174.1 101 81.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 9.5e-42 173.3 101 81.2
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 1.2e-41 172.9 98 82.7
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.2e-41 172.9 97 85.6
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.8e-41 171.8 100 80.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 2.8e-41 171.8 114 74.6
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 3.6e-41 171.4 101 80.2
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-41 171.4 95 87.4
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 4.7e-41 171.0 101 79.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-40 169.9 95 87.4
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.8e-40 169.1 99 81.8
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.8e-40 169.1 143 63.6
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 6.8e-40 167.2 102 76.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 8.9e-40 166.8 102 76.5
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.4e-39 164.5 96 81.2
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.7e-38 162.5 102 74.5
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 2.2e-38 162.2 96 78.1
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 8.3e-38 160.2 95 81.1
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.9e-37 159.1 144 59.7
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 3.0e-35 151.8 130 60.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 8.6e-35 150.2 118 66.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 3.3e-34 148.3 101 68.3
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.6e-33 146.0 77 89.6
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.7e-30 136.0 100 70.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 7.8e-28 127.1 99 62.6
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.3e-27 126.3 101 54.5
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.4e-24 116.3 64 85.9
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 8.4e-22 107.1 98 56.1
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 3.2e-21 105.1 57 91.2
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 7.1e-21 104.0 56 87.5
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.7e-19 99.4 62 79.0
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.3e-19 99.0 55 83.6
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-17 92.8 61 70.5
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.8e-17 92.0 59 72.9
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 2.4e-16 89.0 98 44.9
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 3.1e-16 88.6 98 48.0
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.8e-14 81.6 95 47.4
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.1e-13 80.1 73 54.8
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-11 72.8 37 83.8
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.5e-10 69.7 37 81.1
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.3e-10 68.2 36 83.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 6.2e-09 64.3 53 54.7
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 6.2e-09 64.3 41 65.9
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 8.1e-09 63.9 96 37.5
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.4e-08 63.2 35 74.3
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 5.3e-08 61.2 61 54.1
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.5e-07 59.7 94 34.0
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 5.8e-07 57.8 83 41.0


User provided reference genes

Program Settings