Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 2.9e-134 481.9 235 100.0
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 1.3e-54 217.2 256 50.4
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 5.9e-47 191.8 262 45.4
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 7.2e-29 131.7 264 35.2
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 4.7e-28 129.0 251 39.0
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 4.0e-27 125.9 295 35.3
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.6e-26 123.2 246 38.2
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.4e-26 122.9 257 37.7
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 7.5e-26 121.7 251 36.3
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 9.2e-24 114.8 239 34.7
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 5.0e-22 109.0 252 35.7
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 4.3e-21 105.9 246 32.5
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 2.1e-20 103.6 238 31.5
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 2.8e-20 103.2 231 31.2
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 8.0e-20 101.7 253 30.4
RcHm_v2.0_Chr1g0369781 Rosa chinensis HOM05D006281 ORTHO05D005138 8.9e-19 98.2 340 28.5
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 1.2e-18 97.8 286 27.6
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 2.0e-18 97.1 227 30.0
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 3.4e-18 96.3 308 27.6
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 4.4e-18 95.9 265 30.6
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 4.4e-18 95.9 254 33.1
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 1.3e-17 94.4 253 30.0
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 2.9e-17 93.2 240 31.2
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 4.9e-17 92.4 239 33.1
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 8.3e-17 91.7 253 30.0
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 8.3e-17 91.7 167 40.1
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 2.4e-16 90.1 243 31.3
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 2.4e-16 90.1 239 33.9
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 2.4e-16 90.1 251 29.9
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 3.2e-16 89.7 259 31.7
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 4.1e-16 89.4 249 28.9
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 5.4e-16 89.0 221 32.1
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 1.2e-15 87.8 167 40.1
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.6e-15 87.4 221 30.3
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 2.0e-15 87.0 251 33.5
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 2.7e-15 86.7 248 30.2
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 3.5e-15 86.3 255 31.0
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 4.6e-15 85.9 229 31.0
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 7.8e-15 85.1 125 46.4
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 7.8e-15 85.1 211 34.6
Lsat_1_v5_gn_8_31300 Lactuca sativa HOM05D006281 ORTHO05D005138 1.0e-14 84.7 188 31.4
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 1.0e-14 84.7 244 29.5
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 1.0e-14 84.7 239 29.3
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 1.7e-14 84.0 217 31.3
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 2.3e-14 83.6 125 46.4
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 5.0e-14 82.4 241 32.0
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 6.6e-14 82.0 131 44.3
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 1.1e-13 81.3 233 30.9
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 1.1e-13 81.3 205 30.7
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 1.9e-13 80.5 256 28.5
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 3.3e-13 79.7 226 29.6
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 7.3e-13 78.6 206 30.6
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 7.3e-13 78.6 306 28.1
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 9.5e-13 78.2 201 33.3
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 1.6e-12 77.4 265 27.5
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 2.1e-12 77.0 104 43.3
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 2.1e-12 77.0 92 47.8
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea HOM05D006281 ORTHO05D005138 2.8e-12 76.6 235 29.8
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 3.6e-12 76.3 157 36.9
Haze_25248 Corylus avellana HOM05D006281 ORTHO05D005138 3.6e-12 76.3 64 54.7
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 3.6e-12 76.3 197 34.0
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 6.2e-12 75.5 283 28.6
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 6.2e-12 75.5 240 30.4
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 8.0e-12 75.1 242 31.0
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 8.0e-12 75.1 277 27.1
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 8.0e-12 75.1 199 33.2
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 1.0e-11 74.7 249 29.3
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 1.4e-11 74.3 199 28.6
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 1.8e-11 73.9 265 27.2
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 1.8e-11 73.9 253 28.9
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.8e-11 73.9 223 31.8
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 4.0e-11 72.8 219 30.1
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 5.2e-11 72.4 244 27.9
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 6.8e-11 72.0 79 53.2
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 6.8e-11 72.0 97 41.2
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 8.9e-11 71.6 65 55.4
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 8.9e-11 71.6 73 49.3
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 1.2e-10 71.2 240 30.4
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 1.5e-10 70.9 201 30.8
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 1.5e-10 70.9 69 52.2
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 2.0e-10 70.5 248 26.2
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 2.6e-10 70.1 253 27.7
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 2.6e-10 70.1 69 46.4
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.4e-10 69.7 219 29.2
DCAR_032142 Daucus carota HOM05D006281 ORTHO05D005138 7.5e-10 68.6 85 41.2
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 7.5e-10 68.6 101 41.6
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 9.8e-10 68.2 201 28.9
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 1.3e-09 67.8 125 36.0
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 1.3e-09 67.8 80 43.8
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 1.3e-09 67.8 267 26.6
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.7e-09 67.4 224 26.8
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 2.9e-09 66.6 65 49.2
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 3.7e-09 66.2 99 39.4
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 4.9e-09 65.9 259 27.0
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 8.3e-09 65.1 72 45.8
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 1.1e-08 64.7 79 45.6
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 1.1e-08 64.7 72 45.8
Zm00001eb050110 Zea mays HOM05D006281 ORTHO05D005138 1.1e-08 64.7 194 27.3
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 1.4e-08 64.3 244 25.8
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 1.4e-08 64.3 79 43.0
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 1.4e-08 64.3 99 38.4
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 1.4e-08 64.3 67 44.8
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 1.4e-08 64.3 88 42.0
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 1.9e-08 63.9 79 44.3
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.9e-08 63.9 125 36.0
Sabra03G0071800 Salix brachista HOM05D063919 ORTHO05D005138 1.9e-08 63.9 141 34.0
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 2.4e-08 63.5 79 40.5
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 2.4e-08 63.5 73 45.2
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.4e-08 63.5 127 34.6
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.4e-08 63.5 100 41.0
Carub.0004s2218 Capsella rubella HOM05D010943 ORTHO05D005138 3.2e-08 63.2 72 41.7
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 3.2e-08 63.2 73 46.6
AL4G37660 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 4.1e-08 62.8 54 51.9
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 5.4e-08 62.4 283 27.6
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 5.4e-08 62.4 64 48.4
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 7.0e-08 62.0 69 44.9
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 7.0e-08 62.0 67 44.8
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 7.0e-08 62.0 201 27.4
GSVIVG01032854001 Vitis vinifera HOM05D043099 ORTHO05D005138 7.0e-08 62.0 287 26.8
DCAR_027547 Daucus carota HOM05D000021 ORTHO05D035016 9.2e-08 61.6 85 38.8
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 9.2e-08 61.6 69 44.9
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 9.2e-08 61.6 69 44.9
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 1.2e-07 61.2 99 37.4
HanXRQChr07g0202561 Helianthus annuus HOM05D006281 ORTHO05D005138 1.2e-07 61.2 262 26.0
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.2e-07 61.2 198 27.8
ECA238G3711 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.6e-07 60.8 78 42.3
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 1.6e-07 60.8 264 26.5
AL1G53000 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 2.0e-07 60.5 66 42.4
AT2G40020 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 2.0e-07 60.5 72 45.8
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 2.0e-07 60.5 58 46.6
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 2.0e-07 60.5 68 48.5
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 2.7e-07 60.1 65 43.1
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 2.7e-07 60.1 138 34.8
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 3.5e-07 59.7 68 48.5
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 6.0e-07 58.9 106 36.8
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 6.0e-07 58.9 166 31.3
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 7.8e-07 58.5 51 56.9
PSO339G5625 Papaver somniferum HOM05D006281 ORTHO05D005138 7.8e-07 58.5 243 25.5
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 1.3e-06 57.8 68 45.6
unitig_0.g237 Utricularia gibba HOM05D062541 ORTHO05D005138 1.7e-06 57.4 57 43.9
BcaC03g15045 Brassica carinata HOM05D010943 ORTHO05D005138 3.9e-06 56.2 75 38.7
BolC2t08666H Brassica oleracea HOM05D010943 ORTHO05D005138 3.9e-06 56.2 81 37.0
DCAR_027546 Daucus carota HOM05D000021 ORTHO05D035016 3.9e-06 56.2 81 38.3
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 8.6e-06 55.1 67 43.3
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 8.6e-06 55.1 67 43.3


User provided reference genes

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