Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.4e-119 431.4 233 100.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.2e-101 372.1 233 84.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.9e-98 362.8 237 79.7
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.3e-98 362.1 233 82.4
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.3e-98 362.1 233 78.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 9.5e-98 360.5 233 80.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.6e-97 359.8 221 81.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.1e-97 359.4 233 79.4
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.8e-96 356.3 236 84.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.0e-96 355.1 235 78.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 4.0e-96 355.1 233 79.0
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.8e-95 351.3 219 80.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.3e-94 350.1 235 78.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.9e-94 349.0 233 77.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.7e-94 348.6 219 79.9
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 8.3e-94 347.4 241 74.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 4.1e-93 345.1 216 80.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.6e-92 343.2 216 81.9
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.8e-92 340.9 233 76.8
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.0e-91 340.5 216 78.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.7e-91 339.7 236 77.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-91 339.3 236 76.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.3e-91 339.3 236 76.7
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.0e-91 339.0 217 78.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.9e-91 338.6 216 79.6
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 3.9e-91 338.6 216 81.5
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 5.0e-91 338.2 217 79.3
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 5.0e-91 338.2 236 76.3
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.0e-91 338.2 236 76.3
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.6e-91 337.8 239 73.6
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.5e-90 336.7 218 78.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.5e-90 336.7 228 75.4
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.5e-90 335.9 236 75.8
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.3e-90 335.1 232 74.6
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.6e-90 334.7 229 74.7
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 7.3e-90 334.3 221 76.0
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.2e-89 333.6 234 75.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.2e-89 333.6 236 74.2
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.2e-89 333.6 220 76.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-89 333.6 234 76.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.6e-89 333.2 211 79.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-89 333.2 229 74.2
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.6e-89 333.2 229 74.2
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.6e-89 333.2 233 74.7
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.1e-89 332.8 233 73.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.8e-89 332.4 218 83.5
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.8e-89 332.4 211 78.2
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.6e-89 332.0 234 73.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-88 329.3 219 76.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-88 329.3 220 75.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.9e-88 327.4 217 77.0
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-87 327.0 238 74.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-87 327.0 238 74.4
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.7e-86 323.2 235 73.6
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-86 322.8 210 77.6
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.2e-86 322.8 210 77.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 6.4e-86 321.2 216 73.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 5.4e-85 318.2 236 72.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.2e-84 317.0 217 72.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.1e-84 316.2 208 80.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.6e-84 315.1 216 76.9
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 6.0e-84 314.7 211 74.4
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 7.8e-84 314.3 237 70.9
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 7.8e-84 314.3 218 72.0
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.7e-83 313.2 217 74.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.7e-83 313.2 234 72.2
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.0e-83 312.4 205 75.1
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.0e-83 312.4 205 75.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.5e-82 309.3 241 69.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.3e-82 308.9 214 72.4
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 3.3e-82 308.9 214 76.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.3e-82 307.8 212 73.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 9.5e-82 307.4 216 71.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.6e-81 306.6 220 71.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.6e-81 306.6 216 77.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.8e-81 305.8 238 67.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.6e-81 305.4 235 66.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 8.1e-81 304.3 232 70.3
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 4.4e-79 298.5 210 69.5
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.4e-79 298.5 232 65.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.9e-78 295.8 207 73.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-77 293.9 234 65.4
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.4e-77 292.7 223 70.4
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 9.2e-77 290.8 203 74.9
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.2e-77 290.8 233 64.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.7e-76 289.3 224 69.6
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.6e-76 288.5 212 68.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.8e-76 287.7 241 63.5
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 3.0e-75 285.8 211 69.7
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.5e-74 283.5 233 63.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.3e-74 282.0 203 69.0
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.7e-73 278.5 233 64.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.4e-72 276.2 236 62.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 6.9e-72 274.6 231 67.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 8.9e-72 274.2 212 65.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.6e-71 272.7 231 66.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.4e-71 271.9 212 65.6
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 5.8e-71 271.6 212 66.0
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.8e-71 271.6 214 64.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.7e-70 270.0 215 64.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.9e-70 269.2 228 61.0
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.8e-70 268.9 215 63.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.4e-69 266.9 227 61.7
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.9e-69 266.5 227 60.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.9e-69 266.5 232 61.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-69 266.2 237 60.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.4e-69 266.2 237 60.8
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.4e-69 266.2 237 60.8
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-69 266.2 225 62.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.2e-69 265.8 227 60.8
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.2e-69 265.8 233 66.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.2e-69 265.4 227 60.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.2e-69 265.4 227 60.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 5.4e-69 265.0 225 61.8
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 7.1e-69 264.6 227 60.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-68 263.8 235 60.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.6e-68 261.9 234 60.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-67 260.4 233 60.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.1e-67 258.5 226 59.3
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.9e-66 256.5 218 64.2
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.3e-66 255.8 204 64.7
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 7.3e-66 254.6 228 58.3
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.3e-65 253.8 207 61.8
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.8e-62 242.3 227 60.8
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-61 240.4 143 81.1
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-60 236.9 222 57.2
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.0e-56 222.2 207 54.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 6.4e-54 214.9 198 60.1
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-52 210.7 217 54.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.7e-52 209.5 198 59.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.0e-51 207.6 174 60.9
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.8e-51 206.8 122 82.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.9e-44 181.4 212 50.9
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.3e-43 179.9 121 69.4
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.9e-43 179.1 145 68.3
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.1e-40 169.1 110 71.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.2e-39 167.5 103 77.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.2e-38 163.3 102 75.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.5e-18 97.4 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 4.5e-15 85.9 61 68.9
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.0e-06 55.8 98 29.6
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.0e-06 55.8 98 29.6


User provided reference genes

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