Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 1.2e-244 849.4 430 100.0
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.8e-134 483.4 430 62.6
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 6.4e-132 474.9 440 60.9
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 4.0e-118 429.1 430 55.8
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 4.4e-117 425.6 429 55.9
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 8.4e-116 421.4 393 60.1
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.1e-115 421.0 429 54.3
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 5.4e-115 418.7 429 54.5
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 2.7e-114 416.4 429 53.6
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 6.0e-114 415.2 429 53.6
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 1.0e-113 414.5 429 54.5
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 2.3e-113 413.3 429 53.4
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 2.5e-112 409.8 429 54.3
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.3e-112 409.5 429 52.7
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 1.6e-111 407.1 429 53.6
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 2.1e-111 406.8 429 52.7
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 3.1e-110 402.9 429 52.0
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 1.5e-109 400.6 430 52.3
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 2.6e-109 399.8 429 52.0
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 3.4e-109 399.4 429 51.0
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 5.8e-109 398.7 429 52.7
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.6e-109 398.3 429 52.7
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.3e-108 397.5 429 52.4
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.7e-108 397.1 429 51.7
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 6.4e-108 395.2 430 50.9
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.9e-107 393.7 429 52.2
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.6e-106 390.6 430 50.5
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 2.7e-106 389.8 430 50.5
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.5e-106 389.4 429 51.7
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.3e-105 387.5 430 50.2
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 8.7e-105 384.8 429 50.1
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 8.7e-105 384.8 430 51.4
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.3e-104 381.7 429 51.0
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 2.8e-103 379.8 429 50.8
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 3.6e-103 379.4 430 50.9
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 3.6e-103 379.4 430 50.9
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 1.8e-102 377.1 429 49.9
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 9.0e-102 374.8 429 49.9
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 2.0e-101 373.6 429 49.2
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 4.5e-101 372.5 429 49.2
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 5.8e-101 372.1 429 49.0
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 3.8e-100 369.4 429 49.4
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 8.4e-100 368.2 429 48.7
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 1.1e-99 367.9 457 48.6
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.1e-99 367.9 475 46.5
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 1.2e-98 364.4 429 46.2
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 2.1e-98 363.6 430 47.9
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 2.7e-98 363.2 429 48.3
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 7.9e-98 361.7 429 47.1
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 2.3e-97 360.1 429 46.9
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.1e-96 357.8 429 46.4
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.1e-95 353.6 429 46.4
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 1.8e-94 350.5 429 46.6
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 4.0e-94 349.4 429 46.2
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 9.0e-94 348.2 433 46.0
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 1.2e-93 347.8 429 45.7
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 2.6e-93 346.7 430 46.7
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 2.6e-93 346.7 429 47.3
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 7.6e-93 345.1 430 46.3
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 8.4e-92 341.7 429 45.2
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 1.4e-91 340.9 427 46.1
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 1.4e-91 340.9 429 44.3
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 3.2e-91 339.7 427 43.8
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 7.1e-91 338.6 464 42.7
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 6.0e-90 335.5 428 45.1
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 4.3e-88 329.3 430 43.0
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.3e-84 317.8 480 40.8
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 1.8e-81 307.4 414 42.0
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 3.9e-81 306.2 407 45.7
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 5.1e-81 305.8 430 41.2
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 5.1e-81 305.8 423 42.8
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 6.7e-81 305.4 430 41.4
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 5.7e-80 302.4 430 41.4
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 7.4e-80 302.0 430 40.9
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 7.4e-80 302.0 430 40.9
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 9.7e-80 301.6 436 41.3
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 9.7e-80 301.6 430 42.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 2.8e-79 300.1 431 41.1
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 6.9e-78 295.4 359 48.5
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 2.6e-77 293.5 430 38.6
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.2e-75 286.6 372 46.0
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 4.2e-75 286.2 430 39.5
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 5.5e-75 285.8 430 38.4
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 1.6e-74 284.3 415 40.0
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 4.6e-74 282.7 430 38.4
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 1.0e-73 281.6 178 79.8
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 3.3e-72 276.6 430 38.1
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.7e-72 275.8 388 43.3
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 9.7e-72 275.0 359 44.3
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.3e-71 274.6 413 39.7
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.3e-71 274.6 388 43.0
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 1.8e-70 270.8 363 46.6
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 2.9e-68 263.5 433 38.8
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 3.3e-64 250.0 344 43.0
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 4.4e-64 249.6 448 37.3
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 4.8e-63 246.1 334 44.0
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 3.5e-61 240.0 360 40.6
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 4.2e-59 233.0 424 34.9
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 1.4e-57 228.0 415 33.5
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 3.9e-57 226.5 353 40.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.4e-49 201.4 364 35.7
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 2.2e-44 184.1 430 33.0
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.9e-43 181.0 114 72.8
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 5.7e-32 142.9 414 26.6
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.1e-26 124.4 67 85.1
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 8.0e-26 122.5 67 83.6
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 5.2e-25 119.8 65 80.0
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 8.9e-25 119.0 67 77.6
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 2.6e-24 117.5 64 82.8
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 1.6e-18 98.2 397 20.9
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.4e-17 95.1 235 31.1
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 1.7e-12 78.2 63 60.3


User provided reference genes

Program Settings