Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.2e-40 169.5 238 100.0
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.4e-27 127.5 240 89.2
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.7e-25 120.6 191 90.6
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.4e-24 117.5 239 89.5
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.1e-23 113.6 192 89.1
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 3.5e-23 112.8 238 88.7
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-22 111.3 194 89.2
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.0e-22 111.3 242 84.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.7e-22 110.5 59 86.4
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.7e-22 110.5 59 86.4
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-21 107.8 192 87.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.5e-21 107.5 239 86.6
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 4.3e-21 105.9 59 79.7
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 2.8e-20 103.2 191 86.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.8e-20 102.4 59 81.4
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.1e-19 99.8 238 84.9
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 5.3e-19 99.0 188 87.8
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.3e-19 99.0 234 84.2
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.9e-19 98.6 188 87.8
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.9e-19 98.6 188 87.8
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.9e-19 98.6 188 87.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 9.0e-19 98.2 55 81.8
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.8e-18 95.5 59 72.9
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-17 94.0 239 85.4
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.7e-17 94.0 55 80.0
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 3.8e-17 92.8 59 74.6
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.4e-16 90.9 59 72.9
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 2.4e-16 90.1 57 73.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.4e-16 90.1 59 71.2
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.5e-15 86.3 250 74.4
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.0e-15 85.5 221 81.0
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 2.1e-12 77.0 56 67.9
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 2.1e-12 77.0 56 67.9
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 6.4e-09 65.5 64 54.7
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 6.4e-09 65.5 59 57.6
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 8.4e-09 65.1 70 52.9
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.1e-08 64.7 57 59.6
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.4e-08 64.3 50 66.0
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.4e-08 64.3 49 63.3
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-08 64.3 48 66.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.9e-08 63.9 42 69.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.9e-08 63.9 50 66.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.5e-08 63.5 56 57.1
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.5e-08 63.5 48 64.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.2e-08 63.2 56 57.1
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.2e-08 63.2 42 66.7
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 3.2e-08 63.2 159 30.2
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 4.2e-08 62.8 56 60.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 5.5e-08 62.4 55 58.2
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 5.5e-08 62.4 61 52.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.5e-08 62.4 54 57.4
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.5e-08 62.4 50 62.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 7.1e-08 62.0 40 62.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 7.1e-08 62.0 56 55.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 7.1e-08 62.0 55 56.4
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 9.3e-08 61.6 57 52.6
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 9.3e-08 61.6 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 9.3e-08 61.6 52 61.5
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 9.3e-08 61.6 57 57.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 9.3e-08 61.6 41 61.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.2e-07 61.2 56 55.4
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.2e-07 61.2 56 58.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-07 60.8 61 54.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.6e-07 60.8 61 54.1
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.6e-07 60.8 56 60.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.6e-07 60.8 50 62.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.1e-07 60.5 48 60.4
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.1e-07 60.5 48 60.4
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 2.1e-07 60.5 66 53.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 2.7e-07 60.1 49 59.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.7e-07 60.1 49 59.2
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.6e-07 59.3 48 58.3
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.6e-07 59.3 48 58.3
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.6e-07 59.3 48 58.3
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 4.6e-07 59.3 42 61.9
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 4.6e-07 59.3 48 58.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 4.6e-07 59.3 48 58.3
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.6e-07 59.3 55 54.5
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 4.6e-07 59.3 48 58.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.6e-07 59.3 56 57.1
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 4.6e-07 59.3 58 56.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 58.3
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 58.3
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 60.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 58.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 58.3
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.0e-07 58.9 49 57.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.0e-07 58.9 48 58.3
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 7.9e-07 58.5 49 59.2
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 7.9e-07 58.5 56 53.6
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 7.9e-07 58.5 48 58.3
Actinidia13869 Actinidia chinensis HOM05D000283 ORTHO05D000358 1.0e-06 58.2 29 79.3
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-06 58.2 56 53.6
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.0e-06 58.2 47 66.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.0e-06 58.2 56 57.1
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.3e-06 57.8 50 60.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.3e-06 57.8 48 58.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.3e-06 57.8 48 60.4
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.3e-06 57.8 42 64.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.8e-06 57.4 52 57.7
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.8e-06 57.4 48 58.3
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.8e-06 57.4 55 54.5
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.8e-06 57.4 48 58.3
vmacro23491 Vaccinium macrocarpon HOM05D004463 ORTHO05D004724 1.8e-06 57.4 25 88.0
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.3e-06 57.0 42 59.5
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 48 58.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.3e-06 57.0 60 50.0
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 3.0e-06 56.6 57 50.9
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.0e-06 56.6 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 3.0e-06 56.6 49 61.2
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.0e-06 56.6 56 51.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.0e-06 56.6 50 58.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.9e-06 56.2 51 58.8
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.9e-06 56.2 62 53.2
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 3.9e-06 56.2 50 58.0
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.9e-06 56.2 42 59.5
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 5.1e-06 55.8 48 56.2
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 5.1e-06 55.8 40 65.0
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 5.1e-06 55.8 45 60.0
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-06 55.8 45 60.0
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-06 55.8 45 60.0
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-06 55.8 45 60.0
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.1e-06 55.8 47 63.8
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 5.1e-06 55.8 55 58.2
GSVIVG01030915001 Vitis vinifera HOM05D000054 ORTHO05D008307 5.1e-06 55.8 24 95.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 6.7e-06 55.5 48 54.2
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 6.7e-06 55.5 59 45.8
HanXRQChr08g0220301 Helianthus annuus HOM05D001446 ORTHO05D045219 6.7e-06 55.5 23 91.3
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 6.7e-06 55.5 42 57.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 6.7e-06 55.5 48 56.2
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 6.7e-06 55.5 48 54.2
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.7e-06 55.1 45 55.6
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 8.7e-06 55.1 48 54.2
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 8.7e-06 55.1 48 54.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 8.7e-06 55.1 48 54.2
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 8.7e-06 55.1 44 56.8


User provided reference genes

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