Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.1e-236 823.2 478 100.0
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.8e-159 564.7 507 67.9
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.6e-155 553.5 492 68.7
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 3.9e-154 548.9 485 67.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.0e-154 548.5 483 68.5
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.6e-154 547.7 485 66.4
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 2.1e-152 543.1 487 66.5
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.1e-151 540.8 486 68.5
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.8e-151 540.0 483 66.7
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.5e-150 537.0 491 65.6
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.9e-148 530.0 483 66.3
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 3.5e-147 525.8 479 67.0
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.5e-145 519.6 485 64.1
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.6e-144 515.8 479 65.8
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 4.0e-143 512.3 481 64.4
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 5.2e-143 511.9 483 65.2
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 2.6e-142 509.6 487 64.7
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.7e-141 505.8 473 65.3
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.4e-141 505.0 472 65.3
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-140 504.2 472 65.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 9.2e-140 501.1 471 64.8
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.3e-138 497.3 484 62.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.3e-138 497.3 483 63.4
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.0e-138 496.1 483 62.7
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 6.2e-136 488.4 477 62.9
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 6.8e-135 485.0 478 62.3
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 3.4e-134 482.6 473 66.0
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.3e-133 480.7 488 61.9
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.2e-133 479.9 481 62.6
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.2e-133 479.9 476 64.1
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 6.4e-133 478.4 484 61.8
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.2e-131 474.2 473 62.6
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.6e-131 473.8 483 61.1
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.7e-130 470.3 482 61.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.9e-130 469.2 449 63.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 7.3e-129 464.9 470 60.9
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 3.6e-128 462.6 356 76.1
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.1e-127 461.1 479 62.8
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.1e-127 459.5 472 60.8
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 2.9e-125 453.0 481 59.0
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.2e-124 449.5 499 56.5
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.5e-121 440.7 487 57.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.6e-121 438.0 473 60.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.6e-120 437.2 484 58.3
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.8e-120 436.4 524 54.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 6.2e-120 435.3 477 58.5
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 8.1e-120 434.9 490 57.1
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 9.0e-119 431.4 498 58.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.2e-118 431.0 480 58.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 4.5e-118 429.1 472 58.5
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.9e-117 426.4 648 46.9
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 6.4e-117 425.2 482 58.1
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 4.2e-116 422.5 482 57.3
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.5e-115 419.5 496 56.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 4.6e-115 419.1 479 56.4
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 7.9e-115 418.3 484 56.6
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.3e-114 416.8 480 56.2
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.3e-114 416.8 480 56.2
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 5.1e-114 415.6 471 56.7
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 5.1e-114 415.6 314 75.5
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 8.7e-114 414.8 472 56.1
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.5e-113 414.1 315 74.9
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 5.6e-113 412.1 472 56.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 7.4e-113 411.8 408 62.5
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.6e-112 410.6 472 57.0
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.4e-111 407.5 483 55.9
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 3.1e-111 406.4 478 54.8
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 3.8e-109 399.4 479 55.7
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 4.9e-109 399.1 478 54.0
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.9e-109 399.1 474 55.1
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.4e-108 397.5 473 57.9
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.5e-108 395.6 467 55.2
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 7.1e-108 395.2 475 54.5
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 7.1e-108 395.2 484 55.0
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 2.7e-107 393.3 474 54.4
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 4.6e-107 392.5 546 50.0
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 9.6e-105 384.8 271 79.7
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 2.4e-103 380.2 478 52.1
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 9.0e-103 378.3 470 51.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 6.5e-101 372.1 489 51.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.1e-100 371.3 470 53.4
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.2e-100 369.8 479 53.0
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-99 367.9 467 52.2
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.6e-99 366.3 492 52.6
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.3e-98 364.4 470 53.2
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 3.3e-97 359.8 467 52.2
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.6e-96 357.5 540 47.0
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.4e-95 354.4 478 51.0
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 5.3e-95 352.4 468 52.8
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.9e-93 346.7 477 48.0
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 4.2e-92 342.8 281 71.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 6.1e-91 339.0 477 50.5
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.7e-88 330.9 483 49.3
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.0e-86 323.9 473 47.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.9e-84 317.4 275 63.3
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 3.3e-81 306.6 480 46.0
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 8.2e-80 302.0 469 48.8
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 9.1e-79 298.5 478 46.4
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.6e-78 297.7 273 64.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.0e-77 295.0 472 46.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 6.5e-77 292.4 255 69.8
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.3e-74 283.9 283 64.0
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 2.0e-70 270.8 275 56.7
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.5e-70 270.0 388 48.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 5.9e-70 269.2 222 70.3
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 3.8e-61 240.0 246 55.3
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.2e-59 235.0 282 57.4
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 9.8e-57 225.3 499 40.1
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.0e-53 215.3 240 52.1
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.3e-52 209.1 515 37.5
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 3.6e-51 206.8 280 46.4
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 7.8e-38 162.5 505 31.1
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 5.0e-37 159.8 166 62.7
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.1e-28 132.1 293 37.5
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 6.2e-27 126.3 88 79.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.7e-24 118.2 188 49.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.3e-21 107.8 84 69.0
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.3e-21 107.8 84 69.0
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 3.9e-21 107.1 88 68.2
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 3.9e-21 107.1 88 68.2
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.8e-19 100.9 325 34.5
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.1e-18 99.0 159 47.8
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.2e-18 96.7 105 51.4
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.4e-17 94.0 330 30.6
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.9e-16 90.9 193 34.7
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 1.9e-15 88.2 88 58.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.4e-15 86.7 151 44.4
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.8e-11 74.3 50 74.0
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 3.6e-11 73.9 237 31.6
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.9e-08 63.5 78 52.6
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.4e-07 61.2 46 65.2


User provided reference genes

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