Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p055771 Quercus lobata HOM05D002510 ORTHO05D007210 2.2e-64 248.8 126 100.0
QL08p055755 Quercus lobata HOM05D002510 ORTHO05D007210 2.5e-52 208.8 112 96.4
PGR142G3054 Punica granatum HOM05D002510 ORTHO05D007210 7.8e-30 134.0 113 63.7
CiPaw.01G272500 Carya illinoinensis HOM05D002510 ORTHO05D007210 6.6e-29 131.0 100 65.0
Haze_16889 Corylus avellana HOM05D002510 ORTHO05D007210 3.3e-28 128.6 106 61.3
Cfa001648 Carpinus fangiana HOM05D002510 ORTHO05D007210 5.6e-28 127.9 110 60.0
COL.COLO4_23654 Corchorus olitorius HOM05D002510 ORTHO05D007210 9.6e-28 127.1 114 56.1
Gohir.A13G021900 Gossypium hirsutum HOM05D002510 ORTHO05D007210 1.6e-27 126.3 113 54.0
Gohir.D13G022500 Gossypium hirsutum HOM05D002510 ORTHO05D007210 1.6e-27 126.3 113 54.0
Gorai.013G025200 Gossypium raimondii HOM05D002510 ORTHO05D007210 1.6e-27 126.3 113 54.0
Duzib128G0012 Durio zibethinus HOM05D002510 ORTHO05D007210 2.1e-27 125.9 110 56.4
Hund12052 Selenicereus undatus HOM05D002510 ORTHO05D007210 1.1e-26 123.6 106 57.5
Manes.10G046400 Manihot esculenta HOM05D002510 ORTHO05D007210 2.4e-26 122.5 100 61.0
Thecc.10G074100 Theobroma cacao HOM05D002510 ORTHO05D007210 5.2e-26 121.3 113 55.8
Phvul.007G094700 Phaseolus vulgaris HOM05D002510 ORTHO05D007210 6.8e-26 120.9 112 52.7
Eucgr.G02835 Eucalyptus grandis HOM05D002510 ORTHO05D007210 1.2e-25 120.2 75 72.0
Sc09g0006280 Simmondsia chinensis HOM05D002510 ORTHO05D007210 1.2e-25 120.2 112 54.5
Atru.chr12.781 Acer truncatum HOM05D002510 ORTHO05D007210 4.4e-25 118.2 108 53.7
FAN03G2366 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.3e-24 116.7 113 54.9
Atru.chr12.757 Acer truncatum HOM05D002510 ORTHO05D007210 1.7e-24 116.3 108 52.8
arahy.Tifrunner.gnm1.ann1.UF4UZA Arachis hypogaea HOM05D002510 ORTHO05D007210 2.2e-24 115.9 107 55.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.9e-24 115.5 112 54.5
FAN06G2145 Fragaria x ananassa HOM05D002510 ORTHO05D007210 4.9e-24 114.8 112 52.7
Lalb_Chr06g0162341 Lupinus albus HOM05D002510 ORTHO05D007210 4.9e-24 114.8 118 54.2
arahy.Tifrunner.gnm1.ann1.T8Z27G Arachis hypogaea HOM05D002510 ORTHO05D007210 6.4e-24 114.4 107 54.2
Lj1C913G7 Lonicera japonica HOM05D002510 ORTHO05D007210 8.4e-24 114.0 113 53.1
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.1e-23 113.6 112 53.6
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.1e-23 113.6 112 53.6
Lalb_Chr21g0306101 Lupinus albus HOM05D002510 ORTHO05D007210 1.1e-23 113.6 116 54.3
Dinv36438 Davidia involucrata HOM05D002510 ORTHO05D007210 1.4e-23 113.2 112 55.4
Cpa.g.sc53.84 Carica papaya HOM05D002510 ORTHO05D007210 1.9e-23 112.8 102 57.8
MD07G1174500 Malus domestica HOM05D002510 ORTHO05D007210 4.2e-23 111.7 112 54.5
TAR633G1832 Trochodendron aralioides HOM05D002510 ORTHO05D007210 7.1e-23 110.9 114 50.0
RcHm_v2.0_Chr1g0363331 Rosa chinensis HOM05D002510 ORTHO05D007210 2.1e-22 109.4 110 54.5
AUR62033005 Chenopodium quinoa HOM05D002510 ORTHO05D007210 2.7e-22 109.0 110 53.6
Nitab4.5_0000534g0010 Nicotiana tabacum HOM05D002510 ORTHO05D007210 2.7e-22 109.0 109 54.1
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 6.0e-22 107.8 108 51.9
VMungo0720G2840 Vigna mungo HOM05D002510 ORTHO05D007210 6.0e-22 107.8 112 48.2
AUR62038657 Chenopodium quinoa HOM05D002510 ORTHO05D007210 7.8e-22 107.5 114 51.8
TWI15G1196 Tripterygium wilfordii HOM05D002510 ORTHO05D007210 7.8e-22 107.5 115 49.6
Cc02_g11330 Coffea canephora HOM05D002510 ORTHO05D007210 1.0e-21 107.1 69 68.1
Oeu014387.1 Olea europaea HOM05D002510 ORTHO05D007210 2.3e-21 105.9 125 52.0
Sed0025740 Sechium edule HOM05D002510 ORTHO05D007210 2.3e-21 105.9 104 52.9
EL10Ac3g06545 Beta vulgaris HOM05D002510 ORTHO05D007210 3.0e-21 105.5 115 51.3
ClCG05G021040 Citrullus lanatus HOM05D002510 ORTHO05D007210 8.7e-21 104.0 109 50.5
Glyma.10G210900 Glycine max HOM05D002510 ORTHO05D007210 8.7e-21 104.0 116 50.9
Peaxi162Scf01719g00012 Petunia axillaris HOM05D002510 ORTHO05D007210 8.7e-21 104.0 110 53.6
Rhsim09G0151500 Rhododendron simsii HOM05D002510 ORTHO05D007210 8.7e-21 104.0 98 50.0
Ciclev10030651m.g Citrus clementina HOM05D002510 ORTHO05D007210 1.1e-20 103.6 107 47.7
Potri.008G039400 Populus trichocarpa HOM05D002510 ORTHO05D007210 1.1e-20 103.6 112 50.0
CAN.G656.24 Capsicum annuum HOM05D002510 ORTHO05D007210 1.5e-20 103.2 85 61.2
SalBow3G0762 Salvia bowleyana HOM05D002510 ORTHO05D007210 1.5e-20 103.2 113 51.3
vmacro04870 Vaccinium macrocarpon HOM05D002510 ORTHO05D007210 1.5e-20 103.2 112 49.1
Ciclev10030885m.g Citrus clementina HOM05D002510 ORTHO05D007210 2.5e-20 102.4 110 48.2
SHI21362 Sapria himalayana HOM05D002510 ORTHO05D007210 3.3e-20 102.1 72 65.3
AT5G20660 Arabidopsis thaliana HOM05D002510 ORTHO05D007210 4.3e-20 101.7 109 53.2
CsaV3_5G036260 Cucumis sativus L. HOM05D002510 ORTHO05D007210 4.3e-20 101.7 109 51.4
GSVIVG01016269001 Vitis vinifera HOM05D002510 ORTHO05D007210 5.6e-20 101.3 73 58.9
MSTRG.8144 Avicennia marina HOM05D002510 ORTHO05D007210 9.6e-20 100.5 111 49.5
Aa31LG1G20400 Aethionema arabicum HOM05D002510 ORTHO05D007210 1.3e-19 100.1 107 52.3
Psat6g183520 Pisum sativum HOM05D002510 ORTHO05D007210 1.3e-19 100.1 109 52.3
THA.LOC104827301 Tarenaya hassleriana HOM05D002510 ORTHO05D007210 1.6e-19 99.8 111 53.2
TPR.G1937 Trifolium pratense HOM05D002510 ORTHO05D007210 1.6e-19 99.8 106 48.1
Lj5g0022157 Lotus japonicus HOM05D002510 ORTHO05D007210 2.1e-19 99.4 110 48.2
Manes.10G046500 Manihot esculenta HOM05D002510 ORTHO05D007210 2.1e-19 99.4 105 54.3
Thhalv10024352m.g Eutrema salsugineum HOM05D002510 ORTHO05D007210 2.8e-19 99.0 106 51.9
CARHR290280 Cardamine hirsuta HOM05D002510 ORTHO05D007210 3.6e-19 98.6 109 50.5
Lsat_1_v5_gn_8_20140 Lactuca sativa HOM05D002510 ORTHO05D007210 4.8e-19 98.2 111 47.7
PSO384G1458 Papaver somniferum HOM05D002510 ORTHO05D007210 4.8e-19 98.2 116 44.8
A01p21720 Brassica napus HOM05D002510 ORTHO05D007210 1.1e-18 97.1 73 61.6
BolC1t02655H Brassica oleracea HOM05D002510 ORTHO05D007210 1.1e-18 97.1 73 61.6
BraA01t02081Z Brassica rapa HOM05D002510 ORTHO05D007210 1.1e-18 97.1 73 61.6
Migut.F01756 Erythranthe guttata HOM05D002510 ORTHO05D007210 1.1e-18 97.1 75 56.0
PSO339G3140 Papaver somniferum HOM05D002510 ORTHO05D007210 1.1e-18 97.1 112 43.8
ECA233G4317 Erigeron canadensis HOM05D002510 ORTHO05D007210 1.4e-18 96.7 85 51.8
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 1.4e-18 96.7 101 51.5
Nitab4.5_0001053g0050 Nicotiana tabacum HOM05D002510 ORTHO05D007210 1.8e-18 96.3 113 47.8
Os04g0519925 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D007210 1.8e-18 96.3 73 58.9
Carub.0006s1900 Capsella rubella HOM05D002510 ORTHO05D007210 2.4e-18 95.9 109 48.6
AL6G32210 Arabidopsis lyrata HOM05D002510 ORTHO05D007210 3.1e-18 95.5 114 47.4
MELO3C012427.2 Cucumis melo HOM05D002510 ORTHO05D007210 3.1e-18 95.5 109 49.5
Ah.08g213550 Amaranthus hybridus HOM05D002510 ORTHO05D007210 4.0e-18 95.1 116 47.4
Medtr1g095040 Medicago truncatula HOM05D002510 ORTHO05D007210 9.0e-18 94.0 110 46.4
ATR0048G055 Amborella trichopoda HOM05D002510 ORTHO05D007210 1.5e-17 93.2 112 45.5
C01p27080 Brassica napus HOM05D002510 ORTHO05D007210 1.5e-17 93.2 100 50.0
Zm00001eb378830 Zea mays HOM05D002510 ORTHO05D007210 1.5e-17 93.2 95 52.6
SGA_v2.0_scaffold51G18685 Striga asiatica HOM05D002510 ORTHO05D007210 2.0e-17 92.8 111 43.2
SGA_v2.0_scaffold341G49348 Striga asiatica HOM05D002510 ORTHO05D007210 3.4e-17 92.0 116 43.1
HanXRQChr08g0218901 Helianthus annuus HOM05D002510 ORTHO05D007210 4.4e-17 91.7 110 46.4
unitig_26.g9080 Utricularia gibba HOM05D002510 ORTHO05D007210 4.4e-17 91.7 109 48.6
BcaNung00246 Brassica carinata HOM05D002510 ORTHO05D007210 5.8e-17 91.3 73 60.3
Aqoxy2G01930 Aquilegia oxysepala HOM05D002510 ORTHO05D007210 9.9e-17 90.5 108 48.1
CDE02G1489 Ceratophyllum demersum HOM05D002510 ORTHO05D007210 9.9e-17 90.5 109 44.0
Solyc04g025260.3 Solanum lycopersicum HOM05D002510 ORTHO05D007210 1.7e-16 89.7 81 54.3
Sopen04g011710 Solanum pennellii HOM05D002510 ORTHO05D007210 1.7e-16 89.7 81 54.3
Nn2g10809 Nelumbo nucifera HOM05D002510 ORTHO05D007210 1.2e-09 67.0 41 70.7
Pp3c15_14500 Physcomitrium patens HOM05D002510 ORTHO05D007210 2.6e-09 65.9 106 34.9
CSS0007795 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D007210 1.7e-08 63.2 113 39.8
Pp3c9_12500 Physcomitrium patens HOM05D002510 ORTHO05D007210 1.7e-08 63.2 102 31.4
AagrBONN_evm.TU.Sc2ySwM_344.3754 Anthoceros agrestis HOM05D002510 ORTHO05D007210 1.1e-07 60.5 107 38.3
SMO364G0963 Selaginella moellendorffii HOM05D002510 ORTHO05D007210 2.1e-06 56.2 54 50.0


User provided reference genes

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