Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p055269 Quercus lobata HOM05D002961 ORTHO05D003426 7.7e-49 196.8 99 100.0
QL08p055207 Quercus lobata HOM05D002961 ORTHO05D003426 1.1e-26 123.2 90 68.9
QL08p055257 Quercus lobata HOM05D002961 ORTHO05D003426 1.1e-26 123.2 90 68.9
QL08p055272 Quercus lobata HOM05D002961 ORTHO05D003426 2.1e-22 109.0 94 66.0
Cpa.g.c31528 Carica papaya HOM05D002961 ORTHO05D003426 4.0e-21 104.8 91 58.2
Haze_16863 Corylus avellana HOM05D002961 ORTHO05D003426 6.8e-21 104.0 93 59.1
Cfa001671 Carpinus fangiana HOM05D002961 ORTHO05D003426 3.4e-20 101.7 93 58.1
COL.COLO4_12162 Corchorus olitorius HOM05D002961 ORTHO05D003426 9.8e-20 100.1 91 60.4
Gohir.A05G296300 Gossypium hirsutum HOM05D002961 ORTHO05D003426 9.8e-20 100.1 93 58.1
TWI63G1345 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 9.8e-20 100.1 91 58.2
TWI38G1556 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 1.3e-19 99.8 91 58.2
Gorai.009G313000 Gossypium raimondii HOM05D002961 ORTHO05D003426 1.7e-19 99.4 93 58.1
BcaC01g05491 Brassica carinata HOM05D002961 ORTHO05D003426 4.9e-19 97.8 95 57.9
BolC3t14973H Brassica oleracea HOM05D002961 ORTHO05D003426 4.9e-19 97.8 95 57.9
Glyma.10G109000 Glycine max HOM05D002961 ORTHO05D003426 4.9e-19 97.8 88 59.1
Gohir.D05G296200 Gossypium hirsutum HOM05D002961 ORTHO05D003426 6.4e-19 97.4 93 57.0
BcaB01g03642 Brassica carinata HOM05D002961 ORTHO05D003426 2.4e-18 95.5 99 55.6
C03p25890 Brassica napus HOM05D002961 ORTHO05D003426 2.4e-18 95.5 95 55.8
A03p21820 Brassica napus HOM05D002961 ORTHO05D003426 3.2e-18 95.1 96 58.3
BraA03t11418Z Brassica rapa HOM05D002961 ORTHO05D003426 3.2e-18 95.1 96 58.3
Potri.010G224800 Populus trichocarpa HOM05D002961 ORTHO05D003426 7.0e-18 94.0 92 56.5
Potri.008G037700 Populus trichocarpa HOM05D002961 ORTHO05D003426 1.6e-17 92.8 92 54.3
Thhalv10017189m.g Eutrema salsugineum HOM05D002961 ORTHO05D003426 2.0e-17 92.4 98 55.1
AL4G36330 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 2.7e-17 92.0 100 54.0
CiPaw.01G271000 Carya illinoinensis HOM05D002961 ORTHO05D003426 3.5e-17 91.7 93 57.0
AT2G39020 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 4.6e-17 91.3 101 53.5
Ciclev10032618m.g Citrus clementina HOM05D002961 ORTHO05D003426 4.6e-17 91.3 92 51.1
FAN01G0092 Fragaria x ananassa HOM05D002961 ORTHO05D003426 4.6e-17 91.3 78 60.3
Lalb_Chr19g0129101 Lupinus albus HOM05D002961 ORTHO05D003426 4.6e-17 91.3 98 51.0
Manes.07G097500 Manihot esculenta HOM05D002961 ORTHO05D003426 4.6e-17 91.3 91 53.8
ClCG05G021100 Citrullus lanatus HOM05D002961 ORTHO05D003426 7.8e-17 90.5 97 51.5
FAN06G3681 Fragaria x ananassa HOM05D002961 ORTHO05D003426 7.8e-17 90.5 99 49.5
FAN06G4372 Fragaria x ananassa HOM05D002961 ORTHO05D003426 7.8e-17 90.5 99 49.5
CANSAT56G0472 Cannabis sativa HOM05D002961 ORTHO05D003426 1.0e-16 90.1 72 63.9
Manes.10G048200 Manihot esculenta HOM05D002961 ORTHO05D003426 1.0e-16 90.1 96 52.1
MELO3C012418.2 Cucumis melo HOM05D002961 ORTHO05D003426 1.3e-16 89.7 97 50.5
Prupe.2G211200 Prunus persica HOM05D002961 ORTHO05D003426 1.3e-16 89.7 95 52.6
Thecc.10G077100 Theobroma cacao HOM05D002961 ORTHO05D003426 1.3e-16 89.7 93 52.7
FvH4_7g19050 Fragaria vesca HOM05D002961 ORTHO05D003426 3.9e-16 88.2 99 48.5
Manes.07G097400 Manihot esculenta HOM05D002961 ORTHO05D003426 3.9e-16 88.2 91 50.5
AL4G36340 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 5.0e-16 87.8 96 51.0
AL92U10040 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 5.0e-16 87.8 96 51.0
CANSAT35G1379 Cannabis sativa HOM05D002961 ORTHO05D003426 5.0e-16 87.8 72 62.5
Duzib106G0956 Durio zibethinus HOM05D002961 ORTHO05D003426 5.0e-16 87.8 73 60.3
THA.LOC104825225 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 5.0e-16 87.8 97 51.5
Aa31LG5G20660 Aethionema arabicum HOM05D002961 ORTHO05D003426 8.6e-16 87.0 98 51.0
Carub.0004s2107 Capsella rubella HOM05D002961 ORTHO05D003426 8.6e-16 87.0 94 51.1
AUR62030580 Chenopodium quinoa HOM05D002961 ORTHO05D003426 8.6e-16 87.0 89 57.3
Sed0014207 Sechium edule HOM05D002961 ORTHO05D003426 8.6e-16 87.0 96 50.0
MELO3C012417.2 Cucumis melo HOM05D002961 ORTHO05D003426 1.1e-15 86.7 97 50.5
Manes.07G085800 Manihot esculenta HOM05D002961 ORTHO05D003426 1.1e-15 86.7 91 50.5
PGR142G2276 Punica granatum HOM05D002961 ORTHO05D003426 1.1e-15 86.7 89 52.8
FAN03G0700 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-15 86.3 94 48.9
RcHm_v2.0_Chr1g0362951 Rosa chinensis HOM05D002961 ORTHO05D003426 1.5e-15 86.3 95 47.4
CsaV3_5G036170 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.9e-15 85.9 97 50.5
FAN10G0478 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.9e-15 85.9 78 57.7
FAN10G1125 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.9e-15 85.9 78 57.7
MD01G1105800 Malus domestica HOM05D002961 ORTHO05D003426 1.9e-15 85.9 72 59.7
Potri.008G037600 Populus trichocarpa HOM05D002961 ORTHO05D003426 1.9e-15 85.9 84 53.6
CARHR133810 Cardamine hirsuta HOM05D002961 ORTHO05D003426 2.5e-15 85.5 99 50.5
Sabra10G0173800 Salix brachista HOM05D002961 ORTHO05D003426 2.5e-15 85.5 92 54.3
VMungo0720G2456 Vigna mungo HOM05D002961 ORTHO05D003426 2.5e-15 85.5 96 52.1
Aqoxy1G01189 Aquilegia oxysepala HOM05D002961 ORTHO05D003426 3.3e-15 85.1 92 54.3
AT2G39030 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 3.3e-15 85.1 97 51.5
CSS0004023 Camellia sinensis var. sinensis HOM05D002961 ORTHO05D003426 4.3e-15 84.7 99 54.5
SHI08927 Sapria himalayana HOM05D002961 ORTHO05D003426 4.3e-15 84.7 85 52.9
Sp4g21380 Schrenkiella parvula HOM05D002961 ORTHO05D003426 4.3e-15 84.7 95 51.6
Sc09g0006170 Simmondsia chinensis HOM05D002961 ORTHO05D003426 4.3e-15 84.7 90 54.4
EL10Ac2g02683 Beta vulgaris HOM05D002961 ORTHO05D003426 5.6e-15 84.3 88 54.5
Carub.0004s2106 Capsella rubella HOM05D002961 ORTHO05D003426 5.6e-15 84.3 96 52.1
HanXRQChr12g0368721 Helianthus annuus HOM05D002961 ORTHO05D003426 7.3e-15 84.0 90 51.1
Rhsim03G0118600 Rhododendron simsii HOM05D002961 ORTHO05D003426 7.3e-15 84.0 94 54.3
Nitab4.5_0007307g0010 Nicotiana tabacum HOM05D002961 ORTHO05D003426 9.5e-15 83.6 94 52.1
Phvul.007G240100 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 9.5e-15 83.6 96 51.0
Cc02_g11190 Coffea canephora HOM05D002961 ORTHO05D003426 1.2e-14 83.2 93 51.6
Hma1.2p1_0366F.1_g136890 Hydrangea macrophylla HOM05D002961 ORTHO05D003426 1.2e-14 83.2 95 50.5
CsaV3_5G036180 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.6e-14 82.8 94 50.0
Peaxi162Scf01227g00007 Petunia axillaris HOM05D002961 ORTHO05D003426 1.6e-14 82.8 93 53.8
THA.LOC104826902 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 1.6e-14 82.8 97 50.5
TPR.G13797 Trifolium pratense HOM05D002961 ORTHO05D003426 1.6e-14 82.8 92 52.2
Ca_03078_v3 Cicer arietinum L. HOM05D002961 ORTHO05D003426 2.1e-14 82.4 92 51.1
Lalb_Chr01g0010461 Lupinus albus HOM05D002961 ORTHO05D003426 2.1e-14 82.4 94 50.0
Phvul.007G239400 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 2.1e-14 82.4 90 53.3
Phvul.007G239500 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 2.1e-14 82.4 90 52.2
Actinidia22443 Actinidia chinensis HOM05D002961 ORTHO05D003426 2.8e-14 82.0 93 54.8
Nitab4.5_0000071g0200 Nicotiana tabacum HOM05D002961 ORTHO05D003426 2.8e-14 82.0 93 51.6
Glyma.02G156700 Glycine max HOM05D002961 ORTHO05D003426 3.6e-14 81.6 91 53.8
Sp4g03890 Schrenkiella parvula HOM05D002961 ORTHO05D003426 3.6e-14 81.6 95 52.6
Sopen10g034080 Solanum pennellii HOM05D002961 ORTHO05D003426 3.6e-14 81.6 93 50.5
Psat6g129400 Pisum sativum HOM05D002961 ORTHO05D003426 4.7e-14 81.3 92 48.9
Sed0004049 Sechium edule HOM05D002961 ORTHO05D003426 4.7e-14 81.3 98 50.0
Atru.chr12.813 Acer truncatum HOM05D002961 ORTHO05D003426 6.2e-14 80.9 92 46.7
MSTRG.9164 Avicennia marina HOM05D002961 ORTHO05D003426 8.1e-14 80.5 96 49.0
Sed0016707 Sechium edule HOM05D002961 ORTHO05D003426 8.1e-14 80.5 91 48.4
Solyc10g084640.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 8.1e-14 80.5 93 49.5
Carub.0004s2109 Capsella rubella HOM05D002961 ORTHO05D003426 1.1e-13 80.1 91 51.6
Nn2g13743 Nelumbo nucifera HOM05D002961 ORTHO05D003426 1.1e-13 80.1 92 48.9
TAR633G0023 Trochodendron aralioides HOM05D002961 ORTHO05D003426 1.1e-13 80.1 92 48.9
CsaV3_5G036190 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.8e-13 79.3 94 51.1
PSO407G0084 Papaver somniferum HOM05D002961 ORTHO05D003426 1.8e-13 79.3 88 50.0
MELO3C012419.2 Cucumis melo HOM05D002961 ORTHO05D003426 2.3e-13 79.0 66 60.6
VMungo0720G2309 Vigna mungo HOM05D002961 ORTHO05D003426 2.3e-13 79.0 90 52.2
ECA233G3034 Erigeron canadensis HOM05D002961 ORTHO05D003426 4.0e-13 78.2 91 50.5
Migut.F01970 Erythranthe guttata HOM05D002961 ORTHO05D003426 4.0e-13 78.2 88 50.0
Oeu031329.1 Olea europaea HOM05D002961 ORTHO05D003426 5.2e-13 77.8 93 50.5
Dinv00190 Davidia involucrata HOM05D002961 ORTHO05D003426 6.8e-13 77.4 94 51.1
PSO339G6169 Papaver somniferum HOM05D002961 ORTHO05D003426 6.8e-13 77.4 67 55.2
Sed0001125 Sechium edule HOM05D002961 ORTHO05D003426 6.8e-13 77.4 91 47.3
PSO063G7402 Papaver somniferum HOM05D002961 ORTHO05D003426 8.9e-13 77.0 65 56.9
SalBow4G1667 Salvia bowleyana HOM05D002961 ORTHO05D003426 1.2e-12 76.6 92 46.7
SalBow4G2042 Salvia bowleyana HOM05D002961 ORTHO05D003426 1.2e-12 76.6 92 46.7
TAR636G2919 Trochodendron aralioides HOM05D002961 ORTHO05D003426 1.2e-12 76.6 91 48.4
SalBow6G2357 Salvia bowleyana HOM05D002961 ORTHO05D003426 1.5e-12 76.3 96 46.9
CDE02G1397 Ceratophyllum demersum HOM05D002961 ORTHO05D003426 2.0e-12 75.9 92 50.0
Medtr1g049370 Medicago truncatula HOM05D002961 ORTHO05D003426 2.6e-12 75.5 92 50.0
PSO729G0216 Papaver somniferum HOM05D002961 ORTHO05D003426 3.4e-12 75.1 88 50.0
Lj6g0009968 Lotus japonicus HOM05D002961 ORTHO05D003426 7.5e-12 73.9 92 44.6
PSO210G3713 Papaver somniferum HOM05D002961 ORTHO05D003426 9.9e-12 73.6 89 49.4
PSO210G6097 Papaver somniferum HOM05D002961 ORTHO05D003426 9.9e-12 73.6 88 48.9
CAN.G688.8 Capsicum annuum HOM05D002961 ORTHO05D003426 1.3e-11 73.2 92 46.7
SGA_v2.0_scaffold62G21403 Striga asiatica HOM05D002961 ORTHO05D003426 1.7e-11 72.8 93 47.3
unitig_749.g13572 Utricularia gibba HOM05D002961 ORTHO05D003426 2.9e-11 72.0 95 46.3
ATR1149G016 Amborella trichopoda HOM05D002961 ORTHO05D003426 6.4e-11 70.9 85 49.4
Solyc08g068280.2 Solanum lycopersicum HOM05D002961 ORTHO05D003426 1.9e-10 69.3 86 47.7
DCAR_006425 Daucus carota HOM05D002961 ORTHO05D003426 3.2e-10 68.6 94 43.6
Cc02_g11200 Coffea canephora HOM05D002961 ORTHO05D003426 5.4e-10 67.8 77 53.2
GSVIVG01016243001 Vitis vinifera HOM05D002961 ORTHO05D003426 7.1e-10 67.4 63 52.4
Lsat_1_v5_gn_8_20401 Lactuca sativa HOM05D002961 ORTHO05D003426 9.2e-10 67.0 80 50.0
PGSC0003DMG400010832 Solanum tuberosum HOM05D002961 ORTHO05D003426 9.2e-10 67.0 87 49.4
PGSC0003DMG400014499 Solanum tuberosum HOM05D002961 ORTHO05D003426 9.2e-10 67.0 87 49.4
Nitab4.5_0000052g0170 Nicotiana tabacum HOM05D002961 ORTHO05D003426 1.6e-09 66.2 88 44.3
Sed0008789 Sechium edule HOM05D002961 ORTHO05D003426 2.1e-09 65.9 75 49.3
DCAR_006426 Daucus carota HOM05D002961 ORTHO05D003426 2.7e-09 65.5 93 44.1
PGSC0003DMG400037933 Solanum tuberosum HOM05D002961 ORTHO05D003426 2.7e-09 65.5 92 41.3
ATR0680G063 Amborella trichopoda HOM05D002961 ORTHO05D003426 3.5e-09 65.1 56 58.9
Solyc08g006765.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 3.5e-09 65.1 92 40.2
HPP92_018616 Vanilla planifolia HOM05D002961 ORTHO05D003426 3.5e-09 65.1 89 48.3
Lj5g0009305 Lotus japonicus HOM05D002961 ORTHO05D003426 4.6e-09 64.7 90 44.4
Nitab4.5_0003338g0090 Nicotiana tabacum HOM05D002961 ORTHO05D003426 1.3e-08 63.2 87 44.8
Sopen08g002710 Solanum pennellii HOM05D002961 ORTHO05D003426 1.7e-08 62.8 92 39.1
EL10Ac2g04870 Beta vulgaris HOM05D000215 ORTHO05D008904 3.0e-08 62.0 94 42.6
QL08p055206 Quercus lobata HOM05D002961 ORTHO05D003426 3.0e-08 62.0 51 62.7
Zm00001eb403080 Zea mays HOM05D002961 ORTHO05D003426 8.6e-08 60.5 77 44.2
Mapoly0179s0017 Marchantia polymorpha HOM05D002961 ORTHO05D003426 2.5e-07 58.9 68 45.6
EL10Ac2g04869 Beta vulgaris HOM05D002961 ORTHO05D003426 4.3e-07 58.2 94 39.4
EL10Ac2g04865 Beta vulgaris HOM05D002961 ORTHO05D003426 7.3e-07 57.4 94 39.4
Zm00001eb004140 Zea mays HOM05D002961 ORTHO05D003426 2.8e-06 55.5 83 38.6


User provided reference genes

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