Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.5e-87 326.2 172 100.0
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 8.4e-43 177.6 179 62.6
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.1e-39 167.2 179 58.7
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.4e-31 137.9 153 55.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.3e-21 105.1 175 46.3
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 9.1e-21 104.4 171 50.3
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.2e-20 104.0 162 50.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.0e-20 103.2 177 45.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.9e-20 101.7 175 45.7
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-19 100.5 147 49.7
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 2.9e-19 99.4 180 48.3
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.8e-19 99.0 174 46.6
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 6.5e-19 98.2 176 47.2
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 8.5e-19 97.8 153 47.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 5.5e-18 95.1 169 47.3
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 7.2e-18 94.7 172 47.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.9e-17 91.3 177 42.4
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.4e-16 90.5 174 43.1
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.8e-16 90.1 176 41.5
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.8e-16 90.1 172 45.9
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-16 89.7 173 44.5
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.0e-16 89.4 174 43.1
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 3.9e-16 89.0 174 45.4
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.1e-16 88.6 173 44.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 6.7e-16 88.2 127 51.2
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-15 87.4 168 45.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.1e-15 87.4 97 61.9
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-15 87.0 121 55.4
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.5e-15 87.0 180 42.8
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.5e-15 87.0 162 45.1
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 2.0e-15 86.7 95 63.2
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.3e-15 85.9 97 59.8
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 4.4e-15 85.5 170 43.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 7.4e-15 84.7 96 59.4
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 7.4e-15 84.7 168 44.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 9.7e-15 84.3 95 62.1
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 9.7e-15 84.3 95 62.1
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 9.7e-15 84.3 95 62.1
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 9.7e-15 84.3 165 43.0
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 9.7e-15 84.3 173 43.4
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 9.7e-15 84.3 95 61.1
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.3e-14 84.0 111 55.9
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.7e-14 83.6 173 45.1
Phvul.007G239300 Phaseolus vulgaris HOM05D011393 ORTHO05D013493 1.7e-14 83.6 168 38.7
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.7e-14 83.6 138 48.6
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.7e-14 83.6 100 61.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.2e-14 83.2 176 44.3
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 3.7e-14 82.4 170 42.4
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.8e-14 82.0 122 57.4
Glyma.10G109400 Glycine max HOM05D011393 ORTHO05D013493 4.8e-14 82.0 169 39.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.8e-14 82.0 134 49.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.8e-14 82.0 142 46.5
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.3e-14 81.6 122 57.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 6.3e-14 81.6 169 42.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.4e-13 80.5 183 42.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.8e-13 80.1 95 60.0
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 2.4e-13 79.7 155 44.5
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.4e-13 79.7 163 44.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.4e-13 79.7 138 50.7
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 5.3e-13 78.6 148 44.6
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 5.3e-13 78.6 125 52.8
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 5.3e-13 78.6 99 61.6
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 5.3e-13 78.6 161 42.9
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.3e-13 78.6 134 51.5
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 9.1e-13 77.8 86 62.8
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 9.1e-13 77.8 86 62.8
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 9.1e-13 77.8 126 49.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 9.1e-13 77.8 118 54.2
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 9.1e-13 77.8 162 40.7
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-12 77.4 135 46.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.5e-12 77.0 174 44.3
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.5e-12 77.0 142 49.3
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.5e-12 77.0 133 50.4
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.0e-12 76.6 112 51.8
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.0e-12 76.6 112 51.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.0e-12 76.6 177 42.4
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.6e-12 76.3 134 47.0
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.4e-12 75.9 104 54.8
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.5e-12 75.5 114 53.5
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 4.5e-12 75.5 142 48.6
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 5.9e-12 75.1 133 39.8
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 7.7e-12 74.7 86 60.5
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.7e-12 74.7 118 51.7
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 7.7e-12 74.7 105 55.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 7.7e-12 74.7 167 41.3
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.0e-11 74.3 123 47.2
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.0e-11 74.3 135 45.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.3e-11 73.9 154 39.6
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.3e-11 73.9 108 57.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.2e-11 73.2 129 47.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-11 73.2 87 57.5
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-11 73.2 87 57.5
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.2e-11 73.2 87 57.5
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 3.8e-11 72.4 136 43.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 3.8e-11 72.4 136 43.4
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.8e-11 72.4 89 57.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 3.8e-11 72.4 99 57.6
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.8e-11 72.4 91 57.1
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.0e-11 72.0 136 44.9
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.0e-11 72.0 98 57.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.0e-11 72.0 98 54.1
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 6.5e-11 71.6 87 58.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.5e-11 71.6 105 54.3
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 6.5e-11 71.6 91 58.2
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 8.5e-11 71.2 138 42.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-10 70.9 88 58.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.1e-10 70.9 88 58.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.4e-10 70.5 99 57.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.5e-10 69.7 88 58.0
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.5e-10 69.7 88 58.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.2e-10 69.3 172 40.1
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.2e-10 69.3 99 55.6
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.2e-10 69.3 99 55.6
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.2e-10 69.3 99 55.6
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 4.2e-10 68.9 112 50.9
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 4.2e-10 68.9 88 58.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 5.5e-10 68.6 95 56.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 5.5e-10 68.6 88 56.8
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 7.2e-10 68.2 117 49.6
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 9.4e-10 67.8 150 42.7
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.4e-10 67.8 105 53.3
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 9.4e-10 67.8 97 56.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 9.4e-10 67.8 218 35.3
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.4e-10 67.8 172 39.5
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.2e-09 67.4 165 41.8
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.2e-09 67.4 88 56.8
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.6e-09 67.0 91 52.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 1.6e-09 67.0 117 48.7
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.6e-09 67.0 62 62.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.1e-09 66.6 103 55.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.1e-09 66.6 113 46.0
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.6e-09 65.9 97 56.7
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.7e-09 65.5 88 55.7
VMungo0720G0803 Vigna mungo HOM05D011393 ORTHO05D013493 6.1e-09 65.1 88 46.6
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 8.0e-09 64.7 162 40.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.0e-08 64.3 95 53.7
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 1.0e-08 64.3 133 42.1
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.0e-08 64.3 125 46.4
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.4e-08 63.9 89 50.6
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 1.8e-08 63.5 166 38.0
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.8e-08 63.5 148 43.2
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.0e-08 62.8 91 51.6
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 6.7e-08 61.6 135 41.5
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 8.8e-08 61.2 162 35.8
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-07 60.8 87 57.5
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.3e-07 59.3 87 56.3
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 9.7e-07 57.8 55 70.9
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.2e-06 56.6 124 39.5
Medtr5g032760 Medicago truncatula HOM05D011393 ORTHO05D013493 2.8e-06 56.2 99 48.5


User provided reference genes

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