Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 7.9e-152 540.4 274 100.0
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.9e-114 415.6 271 78.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.1e-112 409.5 282 75.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 6.1e-112 407.9 279 75.6
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 5.7e-102 374.8 270 72.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.8e-98 362.1 272 69.9
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-98 362.1 272 69.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.0e-98 361.7 272 69.9
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.0e-98 361.7 272 69.9
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.5e-97 358.2 272 69.5
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 5.5e-97 358.2 272 70.6
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.2e-97 357.8 272 69.1
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.5e-97 357.5 270 69.6
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.1e-96 356.3 264 69.3
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 6.1e-96 354.8 270 67.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.0e-96 354.4 264 68.9
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.0e-95 354.0 269 70.3
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.4e-95 353.6 271 69.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.2e-94 350.5 267 68.2
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.7e-93 345.5 259 71.0
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 5.4e-92 341.7 281 64.8
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.5e-91 339.0 271 65.7
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 4.5e-91 338.6 261 68.2
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.7e-90 336.7 259 66.0
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.9e-90 335.9 259 66.0
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.9e-90 335.9 262 67.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.8e-88 329.3 261 65.5
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.7e-88 328.6 258 68.2
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.3e-87 326.2 259 66.4
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 4.0e-87 325.5 271 64.9
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.2e-86 323.9 262 64.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 3.4e-86 322.4 267 62.5
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 5.7e-86 321.6 259 65.3
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.3e-85 320.5 271 62.7
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.9e-85 319.3 260 65.0
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.1e-84 317.4 276 60.1
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.4e-84 317.0 259 66.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.4e-84 316.2 263 64.6
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-83 313.9 245 68.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.6e-83 313.5 262 64.1
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.6e-83 313.5 262 63.4
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.7e-82 310.1 258 64.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.7e-82 310.1 254 64.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 5.6e-81 305.1 273 64.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.6e-80 303.5 260 62.7
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.6e-80 302.4 268 61.2
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 4.0e-79 298.9 266 60.5
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.0e-79 298.9 268 62.3
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-78 297.4 223 69.1
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-78 297.4 223 69.5
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.5e-78 297.0 262 59.9
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.0e-78 296.6 267 60.3
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 9.8e-78 294.3 272 59.6
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.2e-75 287.3 264 59.1
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.0e-75 285.0 263 61.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 6.6e-74 281.6 221 67.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.3e-73 279.3 265 58.9
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 9.5e-73 277.7 263 61.2
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.8e-72 276.2 267 55.1
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.1e-71 274.2 266 57.5
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.4e-71 273.9 257 57.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 3.1e-71 272.7 262 58.4
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.8e-71 271.6 265 54.3
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 8.9e-71 271.2 265 54.3
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 4.4e-70 268.9 249 61.8
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 7.5e-70 268.1 264 54.9
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 9.9e-70 267.7 265 54.0
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.2e-69 266.5 263 54.0
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 6.4e-69 265.0 256 55.1
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 8.3e-69 264.6 255 57.6
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.3e-69 264.6 263 54.0
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.4e-68 263.1 265 54.7
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.4e-68 263.1 272 53.7
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.2e-67 260.8 272 54.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.1e-67 260.0 272 52.6
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.7e-67 259.6 258 55.4
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 7.8e-67 258.1 178 70.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.0e-66 257.7 262 55.7
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.3e-66 256.5 271 53.5
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.1e-65 254.2 260 50.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.1e-65 254.2 272 55.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 5.6e-65 251.9 254 52.8
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.4e-63 246.5 264 55.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.8e-63 245.0 271 50.6
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-62 244.2 272 52.2
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-62 244.2 272 52.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.3e-61 240.7 262 51.5
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.8e-61 239.2 260 51.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.9e-61 238.8 254 49.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.9e-61 238.8 259 49.8
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 8.4e-61 238.0 260 51.9
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 8.4e-61 238.0 271 53.1
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.1e-60 237.7 260 55.4
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.9e-60 236.9 269 49.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.2e-60 236.1 286 47.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 9.2e-60 234.6 261 53.3
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 9.2e-60 234.6 263 53.2
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.2e-59 234.2 273 50.5
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 7.8e-59 231.5 258 50.4
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 7.8e-59 231.5 258 51.2
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 6.6e-58 228.4 259 52.9
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 6.6e-58 228.4 258 53.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.5e-57 226.5 261 49.0
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 2.5e-57 226.5 258 51.6
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 8.1e-56 221.5 257 51.0
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.1e-55 221.1 258 49.2
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-55 220.7 170 62.9
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.8e-55 220.3 203 56.2
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-55 220.3 257 47.1
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.8e-55 220.3 271 48.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.4e-55 219.9 258 51.6
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.4e-55 219.9 258 50.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.4e-55 219.9 266 49.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.0e-54 216.9 260 51.5
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 7.6e-54 214.9 258 50.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.3e-53 214.2 261 51.7
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.7e-53 213.8 200 55.0
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 3.8e-53 212.6 259 49.4
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.4e-53 211.8 260 48.1
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.1e-52 211.1 259 49.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.1e-52 211.1 259 49.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 5.4e-52 208.8 259 48.6
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 9.3e-52 208.0 258 47.7
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.7e-51 206.5 258 47.3
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 6.0e-51 205.3 200 54.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.0e-50 203.0 200 52.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.0e-50 203.0 200 52.5
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-49 201.1 200 53.5
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.3e-49 198.4 206 56.8
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 7.3e-49 198.4 250 46.0
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.8e-48 196.4 271 45.4
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.1e-47 194.5 264 44.7
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 5.3e-47 192.2 257 45.9
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.2e-46 191.0 259 45.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.2e-45 186.8 261 42.9
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.9e-45 186.4 264 43.9
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 8.4e-45 184.9 116 75.0
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.4e-44 183.3 174 61.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 4.2e-44 182.6 275 43.3
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.6e-43 180.6 117 73.5
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.1e-43 180.3 158 53.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 4.6e-43 179.1 215 46.0
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.0e-42 177.9 150 56.7
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.1e-42 175.6 183 54.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-37 160.2 102 77.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.1e-35 153.7 143 55.9
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.1e-34 149.1 134 54.5
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.3e-26 124.4 132 48.5
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.9e-26 122.9 115 51.3
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.4e-23 113.6 82 69.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 7.9e-19 98.6 254 33.1
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.8e-16 90.1 70 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 8.2e-16 88.6 86 44.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 5.3e-15 85.9 157 33.8
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.2e-13 80.5 215 29.3
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.2e-12 76.6 296 22.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 7.2e-12 75.5 113 32.7
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.0e-06 57.4 266 27.4


User provided reference genes

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