Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 5.1e-271 937.2 480 100.0
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.1e-151 540.8 515 62.7
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.3e-135 485.3 481 61.1
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 9.6e-129 464.5 496 57.5
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 1.4e-100 370.9 513 46.6
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 9.1e-87 325.1 493 45.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 3.0e-82 310.1 510 43.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.0e-82 310.1 510 43.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.8e-79 300.8 491 42.6
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 5.4e-79 299.3 551 41.4
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.4e-79 299.3 513 42.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 7.0e-79 298.9 511 43.2
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.2e-78 298.1 511 41.7
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.6e-78 297.7 509 41.7
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.7e-78 297.0 500 43.2
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.5e-76 291.2 476 44.1
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 7.2e-76 288.9 521 41.8
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 6.8e-74 282.3 494 41.9
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 8.8e-74 282.0 513 40.2
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.6e-73 280.4 512 40.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.7e-73 279.3 512 38.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 7.0e-71 272.3 548 40.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.9e-70 269.2 517 40.4
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.7e-69 267.7 511 37.6
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.8e-69 266.5 511 37.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.3e-68 263.5 517 39.7
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.6e-67 261.2 494 40.1
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 6.1e-67 259.2 534 40.1
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.0e-67 258.8 503 39.0
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.2e-65 255.0 503 39.8
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.5e-65 254.6 499 39.7
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 7.5e-65 252.3 513 38.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.9e-64 250.4 511 40.5
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.7e-64 250.0 468 39.3
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 4.9e-64 249.6 540 37.2
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.8e-63 247.7 507 37.5
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.8e-63 247.7 504 40.1
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.8e-63 247.7 545 38.2
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.4e-63 247.3 513 37.4
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 3.2e-63 246.9 513 40.5
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 4.1e-63 246.5 513 38.2
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.2e-62 245.0 541 37.2
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 2.0e-62 244.2 507 36.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.0e-61 241.9 519 37.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.0e-61 240.4 504 36.9
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 3.9e-61 240.0 486 38.7
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 5.0e-61 239.6 501 38.5
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 5.6e-60 236.1 496 38.7
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 9.5e-60 235.3 525 37.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.2e-59 235.0 508 35.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.5e-57 228.0 493 37.7
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 3.4e-57 226.9 518 37.6
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.4e-57 226.5 530 36.2
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.4e-57 226.5 526 36.9
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 7.5e-57 225.7 501 37.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 6.4e-56 222.6 509 37.3
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.2e-55 220.3 500 36.8
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 2.0e-54 217.6 515 34.2
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 2.7e-54 217.2 492 35.8
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.0e-54 216.1 494 37.2
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 3.9e-53 213.4 495 36.8
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 5.0e-53 213.0 494 33.6
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 5.0e-53 213.0 566 34.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.6e-53 212.6 493 37.1
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 4.3e-52 209.9 492 34.1
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 3.6e-51 206.8 526 36.1
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 8.1e-51 205.7 526 36.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.2e-49 201.8 607 33.3
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.0e-49 201.1 543 31.9
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.8e-49 199.5 537 34.6
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.2e-48 197.6 517 34.4
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.9e-48 197.2 541 32.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 3.7e-48 196.8 166 66.3
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.9e-48 196.4 530 34.5
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.4e-47 194.9 374 38.5
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 3.2e-47 193.7 532 32.7
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 9.2e-47 192.2 517 34.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.2e-46 191.8 492 33.5
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.5e-46 190.3 522 32.6
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.0e-45 188.7 495 31.5
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.7e-45 188.0 520 32.5
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.6e-45 185.7 522 33.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 8.6e-45 185.7 527 31.3
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.1e-44 185.3 521 32.4
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 7.3e-44 182.6 535 31.4
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.2e-41 175.3 512 33.4
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.2e-41 175.3 515 31.1
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 4.4e-41 173.3 289 41.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 2.9e-40 170.6 525 32.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.6e-38 164.9 494 33.2
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 7.8e-38 162.5 493 32.7
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 3.9e-37 160.2 502 30.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.5e-36 158.3 501 31.3
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 3.3e-36 157.1 495 31.7
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 3.3e-36 157.1 495 31.7
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 3.6e-35 153.7 166 54.8
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 9.9e-33 145.6 505 30.5
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 9.9e-33 145.6 103 70.9
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 6.4e-32 142.9 505 30.5
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 5.4e-31 139.8 208 43.3
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 9.3e-31 139.0 463 30.9
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 2.1e-30 137.9 536 29.1
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 1.7e-29 134.8 529 30.1
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.9e-28 131.3 485 31.8
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.3e-28 130.6 123 56.9
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 7.3e-28 129.4 483 29.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.3e-27 128.6 470 27.7
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 9.0e-26 122.5 450 27.6
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 7.6e-25 119.4 301 36.9
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.4e-23 114.4 452 30.1
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 5.4e-23 113.2 104 58.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.7e-21 108.2 193 37.3
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.5e-20 104.4 84 63.1
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 9.6e-20 102.4 69 72.5
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 2.1e-19 101.3 178 39.3
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.8e-18 98.2 83 63.9
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.8e-18 98.2 177 37.9
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 6.0e-14 83.2 83 49.4
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 7.9e-14 82.8 320 29.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.0e-09 68.2 61 50.8
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 2.6e-09 67.8 77 45.5
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 3.4e-09 67.4 75 41.3
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 4.5e-09 67.0 76 40.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 4.5e-09 67.0 73 45.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 4.5e-09 67.0 171 34.5
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 5.8e-09 66.6 70 42.9
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 7.6e-09 66.2 81 42.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.3e-08 65.5 61 47.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.2e-08 64.7 53 60.4
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.9e-08 64.3 85 36.5
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.9e-08 64.3 61 47.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 3.8e-08 63.9 58 46.6
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 3.8e-08 63.9 228 25.4
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.9e-08 63.5 54 48.1
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.9e-08 63.5 75 38.7
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 4.9e-08 63.5 120 30.8
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 6.5e-08 63.2 74 43.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.1e-07 62.4 251 25.9
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.1e-07 62.4 88 37.5
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.4e-07 62.0 58 50.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.4e-07 62.0 55 50.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.9e-07 61.6 75 37.3
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.9e-07 61.6 71 43.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.9e-07 61.6 71 38.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 2.5e-07 61.2 76 39.5
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.5e-07 61.2 84 38.1
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.2e-07 60.8 176 24.4
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 3.2e-07 60.8 247 22.7
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 4.2e-07 60.5 50 54.0
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 4.2e-07 60.5 71 40.8
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 5.5e-07 60.1 50 52.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 5.5e-07 60.1 75 36.0
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 7.1e-07 59.7 144 29.2
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 9.3e-07 59.3 71 39.4
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 9.3e-07 59.3 63 38.1
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 9.3e-07 59.3 191 24.6
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.2e-06 58.9 181 24.3
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.6e-06 58.5 71 38.0
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.6e-06 58.5 75 37.3
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.6e-06 58.5 212 26.9
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 2.1e-06 58.2 63 46.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 2.1e-06 58.2 63 42.9
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 2.7e-06 57.8 75 33.3
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.7e-06 57.8 63 36.5
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 3.5e-06 57.4 50 48.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 3.5e-06 57.4 50 48.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 3.5e-06 57.4 60 41.7
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 3.5e-06 57.4 69 37.7
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 3.5e-06 57.4 93 34.4
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 4.6e-06 57.0 96 36.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 6.0e-06 56.6 78 33.3
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 6.0e-06 56.6 57 40.4
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 7.9e-06 56.2 75 41.3


User provided reference genes

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