Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 5.0e-148 527.7 258 100.0
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 4.7e-122 441.4 252 85.7
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 5.0e-116 421.4 250 82.8
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.8e-113 412.9 253 80.2
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 3.0e-113 412.1 255 80.0
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 1.3e-111 406.8 255 78.8
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.7e-111 406.4 250 77.2
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 2.9e-111 405.6 253 79.4
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 3.7e-111 405.2 238 82.4
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 3.7e-111 405.2 253 79.1
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 2.4e-110 402.5 258 77.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 4.1e-110 401.7 258 78.3
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 7.0e-110 401.0 255 76.5
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 1.2e-109 400.2 258 76.7
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 2.7e-109 399.1 252 76.6
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 1.3e-108 396.7 254 77.6
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 2.3e-108 396.0 255 77.3
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 2.3e-108 396.0 254 78.3
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.9e-108 395.6 255 77.3
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 3.9e-108 395.2 253 75.9
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.5e-107 393.3 256 76.2
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.5e-107 393.3 255 76.9
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 3.3e-107 392.1 255 77.3
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 4.3e-107 391.7 253 76.7
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 5.6e-107 391.3 258 74.4
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.7e-106 388.3 255 76.5
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 4.7e-106 388.3 252 75.8
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 6.2e-106 387.9 258 76.0
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.0e-105 387.1 255 76.5
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.3e-105 386.0 253 75.9
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 5.2e-105 384.8 254 76.0
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 8.9e-105 384.0 252 75.4
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.5e-104 383.3 253 71.5
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 1.5e-104 383.3 255 74.5
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 1.5e-104 383.3 256 74.6
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 2.0e-104 382.9 258 72.9
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 2.6e-104 382.5 255 74.9
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 1.3e-103 380.2 257 72.8
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 2.2e-103 379.4 253 75.5
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 2.2e-103 379.4 252 74.6
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 2.2e-103 379.4 258 73.6
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 2.9e-103 379.0 253 75.1
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 2.9e-103 379.0 255 72.5
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-102 376.7 255 72.9
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.4e-102 376.7 253 74.7
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.4e-102 376.7 252 73.8
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 3.2e-102 375.6 254 71.7
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 3.2e-102 375.6 252 73.0
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 7.0e-102 374.4 252 71.0
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.2e-101 373.6 253 70.8
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 2.0e-101 372.9 258 71.3
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 6.0e-101 371.3 247 74.5
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 8.6e-100 367.5 248 71.8
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 8.6e-100 367.5 252 69.8
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 8.6e-100 367.5 248 69.8
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 1.1e-99 367.1 259 71.4
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.9e-99 366.3 253 68.8
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.5e-99 365.9 256 69.9
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 2.5e-99 365.9 263 69.6
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 7.3e-99 364.4 248 70.2
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 7.3e-99 364.4 221 76.5
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.2e-98 363.6 215 79.5
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.6e-98 363.2 221 75.6
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 2.1e-98 362.8 219 79.0
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 2.8e-98 362.5 254 67.7
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.8e-97 359.8 213 78.9
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 2.3e-97 359.4 264 68.9
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 2.3e-97 359.4 215 77.7
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 4.0e-97 358.6 221 76.0
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 6.8e-97 357.8 258 67.1
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 1.5e-96 356.7 251 70.5
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 4.4e-96 355.1 257 68.9
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 9.8e-96 354.0 218 75.2
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.7e-95 353.2 215 78.1
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 6.4e-95 351.3 217 75.6
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 8.3e-95 350.9 221 75.1
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.4e-94 350.1 257 67.3
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 4.1e-94 348.6 258 65.1
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 2.7e-93 345.9 221 76.9
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 4.6e-93 345.1 254 66.9
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 6.0e-93 344.7 223 73.5
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 1.3e-92 343.6 260 64.2
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.3e-92 342.8 224 72.8
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 6.6e-92 341.3 223 73.1
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 6.6e-92 341.3 216 75.9
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 6.6e-92 341.3 259 65.6
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 8.6e-92 340.9 224 72.3
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 7.3e-91 337.8 230 71.3
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 7.3e-91 337.8 230 71.3
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 7.3e-91 337.8 230 71.3
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.8e-90 335.9 254 67.3
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 3.6e-90 335.5 226 71.7
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 8.1e-90 334.3 237 69.2
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 8.1e-90 334.3 218 72.9
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 4.0e-89 332.0 257 65.8
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 5.2e-89 331.6 223 71.7
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 8.9e-89 330.9 223 71.3
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 3.4e-88 328.9 252 65.9
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 5.8e-88 328.2 237 67.5
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 5.8e-88 328.2 225 70.7
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 5.8e-88 328.2 225 70.7
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 5.8e-88 328.2 223 71.7
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 1.7e-87 326.6 210 74.3
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 6.4e-87 324.7 244 63.5
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.4e-86 323.6 211 70.1
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.9e-86 323.2 249 64.3
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.9e-86 323.2 255 63.5
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 6.0e-85 318.2 250 63.2
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 6.8e-81 304.7 248 61.7
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 6.8e-81 304.7 249 59.8
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 6.4e-79 298.1 249 60.2
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 2.1e-77 293.1 249 59.8
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 3.9e-76 288.9 218 65.1
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 3.9e-76 288.9 208 64.4
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 5.1e-76 288.5 187 71.1
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 3.3e-75 285.8 233 60.1
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 9.0e-73 277.7 212 62.7
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.5e-72 276.9 257 58.8
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.9e-63 246.1 185 64.9
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 2.3e-60 236.5 161 71.4
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.9e-54 216.9 139 77.7
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 4.5e-48 195.7 175 58.9
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 3.0e-44 183.0 144 62.5
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 8.7e-44 181.4 212 44.8
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 4.5e-40 169.1 114 71.9
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 2.2e-31 140.2 190 41.6
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 3.8e-31 139.4 170 44.1
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 1.8e-28 130.6 98 64.3
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 2.3e-12 77.0 48 70.8
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 1.7e-10 70.9 52 57.7


User provided reference genes

Program Settings