Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.6e-286 988.0 495 100.0
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 7.7e-206 720.7 477 76.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.4e-204 716.5 475 76.0
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 4.0e-186 655.2 494 64.6
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.9e-180 636.3 494 65.2
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 4.2e-180 635.2 494 65.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-178 630.6 495 63.4
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 5.2e-178 628.2 494 64.0
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.8e-178 627.9 495 63.8
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-177 624.8 495 63.2
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 9.8e-177 624.0 495 63.8
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.7e-176 623.2 494 65.0
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.7e-176 623.2 495 63.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-176 623.2 495 63.2
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 3.7e-176 622.1 496 63.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-174 616.3 495 62.6
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.7e-174 615.9 490 63.5
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.5e-174 615.5 490 64.9
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 2.9e-173 612.5 492 62.4
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.8e-173 612.1 490 63.1
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 5.0e-173 611.7 495 62.8
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 7.3e-172 607.8 499 61.3
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 2.1e-171 606.3 496 62.3
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-171 606.3 495 62.6
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.1e-171 606.3 496 61.9
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.8e-171 605.9 501 62.5
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 6.1e-171 604.7 495 62.8
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-170 604.0 495 62.6
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-170 603.6 422 70.9
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.4e-169 599.0 495 62.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 7.5e-169 597.8 495 63.4
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-168 595.9 490 62.0
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 7.0e-167 591.3 499 60.9
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 4.6e-166 588.6 495 62.4
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 6.6e-165 584.7 497 61.2
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 5.6e-164 581.6 495 60.8
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 2.8e-163 579.3 497 59.6
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.4e-162 577.0 494 59.7
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 8.3e-160 567.8 501 60.3
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 9.2e-159 564.3 499 59.7
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 9.2e-159 564.3 493 58.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 2.3e-157 559.7 496 59.1
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 5.0e-157 558.5 495 57.2
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 8.6e-157 557.8 487 59.3
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 5.6e-156 555.1 488 58.8
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 7.3e-156 554.7 495 58.8
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.6e-155 553.5 490 59.6
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.1e-155 553.1 495 56.8
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.8e-154 550.1 495 56.6
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.3e-154 549.7 493 56.4
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 5.2e-154 548.5 491 57.4
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 6.8e-154 548.1 495 58.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 3.4e-153 545.8 492 58.7
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 3.4e-153 545.8 495 55.8
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 7.5e-153 544.7 483 58.2
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 3.7e-152 542.3 486 59.7
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 6.4e-152 541.6 496 56.7
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 6.4e-152 541.6 490 56.3
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.4e-151 540.4 493 55.6
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.4e-151 539.7 491 56.8
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 4.1e-151 538.9 480 56.9
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 7.1e-151 538.1 495 55.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.2e-150 537.3 484 56.8
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.1e-150 536.6 491 56.2
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 4.6e-150 535.4 493 55.2
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 6.0e-150 535.0 491 56.2
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 3.0e-149 532.7 490 56.9
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 3.0e-149 532.7 490 56.9
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 8.6e-149 531.2 491 56.6
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 8.6e-149 531.2 496 56.2
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.1e-148 530.8 494 56.9
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.5e-148 530.4 491 56.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 4.3e-148 528.9 482 58.3
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 5.6e-148 528.5 476 56.5
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.2e-147 527.3 496 57.3
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.4e-146 523.9 494 54.3
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 3.1e-146 522.7 484 55.4
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.8e-146 521.5 495 53.7
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 2.6e-145 519.6 495 55.8
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 3.4e-145 519.2 488 56.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 5.8e-145 518.5 373 68.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 5.8e-145 518.5 485 55.3
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 7.6e-145 518.1 486 56.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 7.6e-145 518.1 489 56.0
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.9e-144 516.2 489 55.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 3.8e-144 515.8 489 55.6
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 3.8e-144 515.8 373 66.8
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 4.9e-144 515.4 542 50.6
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 7.1e-143 511.5 489 55.6
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.1e-140 504.2 494 53.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.5e-140 503.8 498 55.8
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 3.3e-140 502.7 490 52.2
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.2e-137 494.2 492 52.4
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.9e-136 488.8 481 56.8
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 6.4e-136 488.4 480 52.5
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.1e-134 483.4 496 51.0
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.5e-132 476.5 494 52.0
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.6e-131 473.8 494 52.6
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.8e-131 473.0 495 51.1
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-130 471.1 500 51.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.0e-130 469.2 498 49.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.9e-130 468.4 483 50.5
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-129 466.8 500 50.8
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 3.8e-128 462.6 386 59.6
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-127 461.1 490 52.9
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.1e-126 456.8 486 51.6
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.6e-123 447.2 438 53.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.6e-123 447.2 469 51.8
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.3e-117 426.8 497 46.3
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-107 394.4 328 60.1
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.2e-107 391.7 420 50.7
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 7.6e-105 385.2 529 41.0
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.8e-101 374.0 469 45.4
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-99 367.9 292 62.7
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.8e-99 366.7 291 62.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 9.1e-98 361.7 479 45.3
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 6.5e-96 355.5 291 61.9
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.1e-95 354.8 410 49.0
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-94 350.9 495 42.2
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.6e-94 349.7 375 50.9
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 6.1e-94 349.0 382 51.6
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.1e-90 336.7 493 40.2
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 4.5e-89 332.8 294 57.5
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.0e-88 331.6 268 61.9
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.4e-87 327.8 522 40.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.7e-86 322.8 419 43.9
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.7e-80 304.3 357 45.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.0e-76 290.8 184 78.3
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.3e-75 288.1 380 42.6
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 5.5e-71 272.7 259 57.5
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.8e-67 259.6 423 36.6
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.3e-64 251.5 474 34.0
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 6.6e-64 249.2 487 34.3
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-63 248.4 160 72.5
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.5e-63 247.3 320 43.4
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 5.5e-63 246.1 256 52.0
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-62 244.2 494 34.4
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 6.8e-61 239.2 234 54.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 8.9e-61 238.8 476 35.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.1e-58 231.9 543 32.2
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 5.4e-58 229.6 186 63.4
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.2e-57 228.4 602 30.7
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.5e-55 221.5 230 50.9
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.8e-54 217.2 173 63.0
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.0e-53 213.8 373 34.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.5e-52 211.5 499 30.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 4.4e-52 209.9 422 34.6
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 4.7e-46 189.9 373 34.3
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 6.2e-46 189.5 255 42.7
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-45 188.7 198 50.5
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 6.8e-45 186.0 268 42.2
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.4e-44 183.3 280 39.6
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.4e-42 178.3 145 62.1
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.7e-41 174.1 454 31.3
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 7.5e-36 156.0 187 42.2
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.7e-35 154.8 475 29.7
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.5e-33 147.1 120 60.0
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 7.8e-33 146.0 127 60.6
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-32 145.2 98 66.3
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 4.3e-31 140.2 306 35.0
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.6e-30 138.3 92 71.7
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.4e-29 135.2 128 56.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 8.9e-29 132.5 192 44.3
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 3.5e-25 120.6 152 44.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 3.0e-24 117.5 135 47.4
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 8.7e-24 115.9 134 47.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 8.4e-19 99.4 103 48.5
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 3.3e-15 87.4 146 38.4
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.8e-13 81.6 296 23.6
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.5e-12 77.0 73 52.1


User provided reference genes

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