Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 2.3e-159 565.5 271 100.0
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.6e-133 479.6 259 86.9
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 7.6e-131 470.7 260 85.8
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 3.0e-127 458.8 261 83.5
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.9e-127 458.4 258 84.1
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 1.1e-126 456.8 260 84.2
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 1.5e-126 456.4 258 83.3
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.5e-126 456.4 258 83.3
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.5e-126 456.4 258 83.3
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 1.9e-126 456.1 261 82.4
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 2.5e-126 455.7 262 82.8
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 7.3e-126 454.1 258 82.2
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 9.6e-126 453.8 258 81.4
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-125 453.4 258 82.9
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-125 453.4 258 82.9
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 1.6e-125 453.0 261 82.0
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 3.6e-125 451.8 259 80.3
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 9.0e-124 447.2 258 82.6
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 2.0e-123 446.0 259 81.1
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.4e-123 445.3 258 81.8
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 9.9e-123 443.7 258 79.5
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 1.3e-122 443.4 259 78.4
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 1.3e-122 443.4 261 80.5
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.7e-122 443.0 259 80.3
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 8.4e-122 440.7 258 79.1
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 4.6e-120 434.9 261 78.5
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 4.6e-120 434.9 257 81.3
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 7.9e-120 434.1 250 80.8
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 7.9e-120 434.1 261 79.3
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 1.0e-119 433.7 263 80.2
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.8e-119 433.0 258 77.9
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.3e-119 432.6 262 79.0
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 3.9e-119 431.8 259 80.3
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 1.1e-118 430.3 259 79.5
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 1.9e-118 429.5 259 78.8
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 9.6e-118 427.2 254 79.1
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.3e-117 426.8 255 79.6
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 2.8e-117 425.6 260 78.1
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 4.8e-117 424.9 223 88.3
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 4.8e-117 424.9 251 78.1
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 1.1e-116 423.7 237 82.7
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 4.0e-116 421.8 262 76.0
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 6.9e-116 421.0 252 79.0
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 9.0e-116 420.6 226 85.8
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 1.2e-115 420.2 267 76.8
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 1.5e-115 419.9 234 82.1
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 2.0e-115 419.5 251 79.3
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.6e-115 419.1 261 77.4
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 2.6e-115 419.1 261 77.0
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 3.4e-115 418.7 261 77.4
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 3.4e-115 418.7 226 85.4
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 5.8e-115 417.9 256 77.7
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.3e-114 416.8 226 85.4
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 1.7e-114 416.4 248 80.6
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 2.4e-113 412.5 223 85.2
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 3.2e-113 412.1 258 76.4
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 3.2e-113 412.1 254 77.6
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 7.1e-113 411.0 259 75.7
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 2.1e-112 409.5 263 75.3
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 7.9e-112 407.5 226 84.5
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 1.0e-111 407.1 254 75.2
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 1.3e-111 406.8 256 75.4
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 1.8e-111 406.4 263 74.1
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 2.3e-111 406.0 262 74.4
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 1.1e-110 403.7 254 75.2
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.5e-110 402.5 268 74.3
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 9.6e-110 400.6 293 68.9
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 2.8e-109 399.1 255 74.1
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 8.2e-109 397.5 227 81.1
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 2.4e-108 396.0 255 73.7
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 5.3e-108 394.8 254 73.6
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 6.9e-108 394.4 251 75.7
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 1.2e-107 393.7 254 73.2
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 1.5e-107 393.3 231 80.1
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 2.0e-107 392.9 265 71.3
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 2.6e-107 392.5 230 78.7
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 1.3e-106 390.2 250 74.8
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 6.5e-106 387.9 227 78.0
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 4.2e-105 385.2 250 73.2
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 5.1e-103 378.3 257 71.2
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 5.1e-103 378.3 257 71.2
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 8.7e-103 377.5 226 76.1
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 1.3e-101 373.6 257 70.4
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 3.7e-101 372.1 257 69.6
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 6.3e-101 371.3 267 68.5
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 1.4e-100 370.2 226 74.8
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 1.4e-100 370.2 226 75.2
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 4.1e-100 368.6 255 70.2
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 1.5e-94 350.1 236 73.3
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 3.8e-90 335.5 170 90.6
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 1.5e-86 323.6 169 88.2
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 7.4e-86 321.2 225 66.2
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 6.3e-85 318.2 224 66.1
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 1.2e-83 313.9 228 62.7
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 1.2e-83 313.9 279 60.9
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 4.5e-83 312.0 264 58.3
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 6.5e-82 308.1 169 84.0
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 5.5e-81 305.1 222 63.1
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 6.1e-80 301.6 191 75.4
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 5.0e-74 282.0 171 76.0
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 4.4e-70 268.9 199 67.3
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 1.8e-68 263.5 172 77.3
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 1.1e-65 254.2 203 65.0
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 2.5e-65 253.1 137 87.6
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 1.8e-60 236.9 132 79.5
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 1.5e-54 217.2 136 72.8
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.4e-52 210.7 110 81.8
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.7e-51 206.5 130 74.6
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 4.5e-51 205.7 184 62.5
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 2.6e-46 189.9 199 51.3
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 3.2e-44 183.0 162 61.7
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 3.3e-41 172.9 224 43.8
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 8.0e-40 168.3 258 39.9
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 7.3e-33 145.2 84 81.0
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 6.4e-29 132.1 157 44.6
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 9.2e-28 128.3 198 37.9
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 1.3e-26 124.4 236 33.1
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.2e-24 117.9 243 36.2
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 5.2e-23 112.5 96 63.5
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 1.1e-17 94.7 57 78.9
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.7e-13 80.9 223 29.1
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 2.9e-13 80.1 54 64.8
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 8.4e-13 78.6 41 82.9
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 3.2e-12 76.6 42 83.3
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-07 61.6 30 93.3
Peaxi162Scf00786g00028 Petunia axillaris HOM05D014441 ORTHO05D016353 2.0e-06 57.4 30 80.0


User provided reference genes

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