Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.4e-47 191.8 94 100.0
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.1e-25 119.8 61 91.8
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.5e-25 118.6 62 88.7
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.3e-25 118.2 61 90.2
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.3e-25 118.2 60 91.7
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 4.3e-25 117.9 62 85.5
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 4.3e-25 117.9 62 88.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 5.6e-25 117.5 62 85.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 5.6e-25 117.5 60 85.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.6e-24 115.9 64 87.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.8e-24 115.2 62 88.7
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.8e-24 115.2 62 88.7
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 6.2e-24 114.0 60 88.3
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 8.2e-24 113.6 62 85.5
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.1e-23 113.2 62 87.1
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.4e-23 112.8 60 86.7
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-23 112.8 62 87.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.8e-23 112.5 64 81.2
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.8e-23 112.5 61 86.9
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.4e-23 112.1 60 85.0
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 3.1e-23 111.7 62 85.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.1e-23 111.7 64 82.8
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 4.0e-23 111.3 62 85.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 6.9e-23 110.5 60 81.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 6.9e-23 110.5 60 90.0
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 9.0e-23 110.2 60 83.3
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.2e-22 109.8 60 81.7
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.2e-22 109.8 57 86.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.5e-22 109.4 62 80.6
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.5e-22 109.4 60 83.3
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.0e-22 109.0 63 81.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.0e-22 109.0 62 85.5
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.6e-22 108.6 63 81.0
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 85.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 85.0
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 88.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 81.7
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 81.7
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-22 108.6 60 81.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.6e-22 108.6 61 82.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.4e-22 108.2 60 83.3
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 4.5e-22 107.8 62 83.9
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 4.5e-22 107.8 62 83.9
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 4.5e-22 107.8 62 82.3
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.5e-22 107.8 62 82.3
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 5.8e-22 107.5 60 81.7
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 7.6e-22 107.1 60 86.7
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 7.6e-22 107.1 60 86.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.6e-22 107.1 69 72.5
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 7.6e-22 107.1 60 85.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.0e-21 106.7 62 75.8
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.0e-21 106.7 64 76.6
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.3e-21 106.3 60 85.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-21 106.3 60 80.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.7e-21 105.9 62 82.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.7e-21 105.9 62 79.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 2.2e-21 105.5 60 80.0
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.9e-21 105.1 60 85.0
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.9e-21 105.1 62 82.3
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.8e-21 104.8 96 54.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 4.9e-21 104.4 62 82.3
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.9e-21 104.4 60 85.0
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.9e-21 104.4 62 83.9
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 4.9e-21 104.4 62 83.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.9e-21 104.4 62 77.4
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 4.9e-21 104.4 60 80.0
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 6.5e-21 104.0 62 77.4
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 6.5e-21 104.0 62 79.0
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 8.4e-21 103.6 63 81.0
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.4e-21 103.6 60 83.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.4e-21 103.6 61 77.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 8.4e-21 103.6 62 80.6
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.1e-20 103.2 60 81.7
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.1e-20 103.2 61 78.7
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.1e-20 103.2 62 77.4
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.1e-20 103.2 55 85.5
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.4e-20 102.8 70 71.4
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-20 102.8 62 75.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.4e-20 102.8 62 75.8
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.4e-20 102.8 62 75.8
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 2.5e-20 102.1 53 86.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 2.5e-20 102.1 53 86.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.5e-20 102.1 62 75.8
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.5e-20 102.1 60 78.3
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.5e-20 102.1 62 74.2
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.5e-20 102.1 62 74.2
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.5e-20 102.1 62 74.2
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.5e-20 102.1 61 82.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.2e-20 101.7 59 79.7
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.2e-20 101.7 62 74.2
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.2e-20 101.7 60 80.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.2e-20 101.7 60 80.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.2e-20 101.7 60 76.7
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 4.2e-20 101.3 59 81.4
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 5.5e-20 100.9 55 83.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.5e-20 100.9 55 83.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 5.5e-20 100.9 65 75.4
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 5.5e-20 100.9 62 80.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 5.5e-20 100.9 62 80.6
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 7.1e-20 100.5 62 79.0
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 7.1e-20 100.5 62 79.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 7.1e-20 100.5 62 75.8
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 9.3e-20 100.1 62 79.0
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 9.3e-20 100.1 65 75.4
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.2e-19 99.8 60 78.3
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-19 99.8 53 84.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-19 99.8 53 84.9
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.2e-19 99.8 62 71.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.1e-19 99.0 61 72.1
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.1e-19 99.0 62 77.4
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 2.1e-19 99.0 53 86.8
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.1e-19 99.0 62 75.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.1e-19 99.0 60 80.0
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.7e-19 98.6 82 61.0
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.5e-19 98.2 61 77.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.5e-19 98.2 61 77.0
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 4.6e-19 97.8 60 73.3
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 7.9e-19 97.1 55 83.6
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-18 96.7 64 71.9
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.0e-18 96.7 60 76.7
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.3e-18 96.3 62 72.6
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.3e-18 95.5 62 77.4
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.9e-18 94.7 59 71.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.1e-17 93.2 61 70.5
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.5e-17 92.8 59 71.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.5e-17 92.8 61 72.1
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.5e-17 92.0 59 71.2
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.3e-17 91.7 61 72.1
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 4.3e-17 91.3 60 75.0
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.7e-17 90.9 66 66.7
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 7.4e-17 90.5 60 75.0
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 2.2e-16 89.0 61 70.5
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 2.2e-16 89.0 56 75.0
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.8e-16 88.6 58 72.4
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 8.2e-16 87.0 62 71.0
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 3.1e-15 85.1 51 72.5
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.0e-13 80.1 38 92.1
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.9e-12 75.9 38 89.5
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 5.5e-12 74.3 38 84.2
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.6e-11 71.6 65 56.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.0e-10 70.1 62 56.5
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.5e-09 66.2 41 63.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 2.2e-08 62.4 62 54.8


User provided reference genes

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