Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p049047 Quercus lobata HOM05D007870 ORTHO05D010015 9.2e-32 139.8 81 100.0
Sopen01g038280 Solanum pennellii HOM05D007870 ORTHO05D010015 2.0e-23 112.1 81 79.0
PGSC0003DMG400000161 Solanum tuberosum HOM05D007870 ORTHO05D010015 1.5e-21 105.9 81 77.8
arahy.Tifrunner.gnm1.ann1.LLY2P5 Arachis hypogaea HOM05D007870 ORTHO05D010015 7.3e-21 103.6 81 79.0
arahy.Tifrunner.gnm1.ann1.52J70V Arachis hypogaea HOM05D007870 ORTHO05D010015 2.1e-20 102.1 81 77.8
DCAR_025186 Daucus carota HOM05D007870 ORTHO05D010015 4.7e-20 100.9 82 74.4
Phvul.010G097100 Phaseolus vulgaris HOM05D007870 ORTHO05D010015 2.3e-19 98.6 80 77.5
Os02g0824400 Oryza sativa ssp. japonica HOM05D007870 ORTHO05D010015 5.2e-19 97.4 81 75.3
unitig_8.g3804 Utricularia gibba HOM05D007870 ORTHO05D010015 2.0e-18 95.5 82 74.4
Oeu056365.2 Olea europaea HOM05D007870 ORTHO05D010015 2.9e-17 91.7 110 58.2
MELO3C006117.2 Cucumis melo HOM05D007870 ORTHO05D010015 1.4e-16 89.4 82 70.7
BcaB02g09002 Brassica carinata HOM05D007870 ORTHO05D010015 3.2e-16 88.2 80 70.0
BolC4t28688H Brassica oleracea HOM05D007870 ORTHO05D010015 4.1e-16 87.8 81 69.1
Thhalv10001707m.g Eutrema salsugineum HOM05D007870 ORTHO05D010015 4.1e-16 87.8 81 69.1
Carub.0004s2856 Capsella rubella HOM05D007870 ORTHO05D010015 2.0e-15 85.5 80 68.8
Dinv43804 Davidia involucrata HOM05D007870 ORTHO05D010015 3.5e-15 84.7 81 70.4
Sopen07g023130 Solanum pennellii HOM05D007870 ORTHO05D010015 1.3e-14 82.8 81 67.9
FvH4_7g13990 Fragaria vesca HOM05D007870 ORTHO05D010015 2.3e-14 82.0 81 65.4
Zm00001eb190830 Zea mays HOM05D007870 ORTHO05D010015 2.3e-14 82.0 81 64.2
CDE09G0625 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 3.0e-14 81.6 82 64.6
Aa31LG10G15580 Aethionema arabicum HOM05D007870 ORTHO05D010015 5.0e-14 80.9 83 65.1
Lalb_Chr10g0097081 Lupinus albus HOM05D007870 ORTHO05D010015 1.5e-13 79.3 82 64.6
TWI23G0891 Tripterygium wilfordii HOM05D007870 ORTHO05D010015 1.9e-13 79.0 81 64.2
Psat4g155360 Pisum sativum HOM05D007870 ORTHO05D010015 2.5e-13 78.6 81 61.7
RcHm_v2.0_Chr1g0354641 Rosa chinensis HOM05D007870 ORTHO05D010015 2.5e-13 78.6 81 64.2
HPP92_014735 Vanilla planifolia HOM05D007870 ORTHO05D010015 4.3e-13 77.8 81 63.0
BolC4t22300H Brassica oleracea HOM05D007870 ORTHO05D010015 1.2e-12 76.3 80 62.5
CDE11G0999 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 3.6e-12 74.7 82 59.8
Thecc.01G360900 Theobroma cacao HOM05D007870 ORTHO05D010015 3.6e-12 74.7 82 63.4
Glyma.07G072200 Glycine max HOM05D007870 ORTHO05D010015 6.2e-12 73.9 81 61.7
Rhsim07G0016800 Rhododendron simsii HOM05D007870 ORTHO05D010015 2.3e-11 72.0 136 42.6
vmacro13293 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 4.0e-11 71.2 83 61.4
vmacro23343 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 4.0e-11 71.2 83 61.4
Cc02_g37830 Coffea canephora HOM05D007870 ORTHO05D010015 5.2e-11 70.9 81 61.7
Lj3g0023390 Lotus japonicus HOM05D007870 ORTHO05D010015 6.8e-11 70.5 80 63.8
FAN06G1295 Fragaria x ananassa HOM05D007870 ORTHO05D010015 2.6e-10 68.6 81 58.0
Nn6g33472 Nelumbo nucifera HOM05D007870 ORTHO05D010015 4.4e-10 67.8 81 58.0
A05p05830 Brassica napus HOM05D007870 ORTHO05D010015 2.9e-09 65.1 80 56.2
BraA04t18871Z Brassica rapa HOM05D007870 ORTHO05D010015 4.9e-09 64.3 81 55.6
BcaC02g07064 Brassica carinata HOM05D007870 ORTHO05D010015 1.9e-08 62.4 81 54.3
C04p71900 Brassica napus HOM05D007870 ORTHO05D010015 1.9e-08 62.4 81 54.3
A04p34100 Brassica napus HOM05D007870 ORTHO05D010015 2.4e-08 62.0 81 54.3
FAN03G1806 Fragaria x ananassa HOM05D007870 ORTHO05D010015 4.1e-08 61.2 81 55.6
Lalb_Chr04g0256851 Lupinus albus HOM05D007870 ORTHO05D010015 4.1e-08 61.2 82 56.1
AL4G45070 Arabidopsis lyrata HOM05D007870 ORTHO05D010015 5.4e-08 60.8 80 53.8
BraA05t19548Z Brassica rapa HOM05D007870 ORTHO05D010015 5.4e-08 60.8 80 55.0
MD01G1056300 Malus domestica HOM05D007870 ORTHO05D010015 7.1e-08 60.5 81 54.3
Sp4g27930 Schrenkiella parvula HOM05D007870 ORTHO05D010015 7.1e-08 60.5 81 54.3
SalBow3G1909 Salvia bowleyana HOM05D007870 ORTHO05D010015 9.2e-08 60.1 82 54.9
FAN01G0023 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.6e-07 59.3 81 54.3
FAN06G2504 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.6e-07 59.3 81 54.3
Haze_07128 Corylus avellana HOM05D001677 ORTHO05D001682 2.1e-07 58.9 35 94.3
Duzib138G1310 Durio zibethinus HOM05D007870 ORTHO05D010015 2.7e-07 58.5 82 54.9
Cfa018734 Carpinus fangiana HOM05D001677 ORTHO05D001682 6.0e-07 57.4 33 97.0
Manes.05G036400 Manihot esculenta HOM05D007870 ORTHO05D010015 6.0e-07 57.4 81 50.6
PGR031G0106 Punica granatum HOM05D007870 ORTHO05D010015 6.0e-07 57.4 81 51.9
Peaxi162Scf00056g00013 Petunia axillaris HOM05D007870 ORTHO05D010015 1.7e-06 55.8 81 50.6
TPR.G39935 Trifolium pratense HOM05D007870 ORTHO05D010015 3.0e-06 55.1 81 50.6


User provided reference genes

Program Settings