Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 2.8e-68 261.9 142 100.0
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 1.6e-39 166.4 138 67.4
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.7e-39 165.6 136 66.9
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 4.8e-36 154.8 184 52.2
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 8.2e-36 154.1 140 62.1
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 8.5e-33 144.1 140 57.9
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.9e-32 142.9 152 54.6
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 2.7e-31 139.0 125 60.0
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 3.6e-31 138.7 127 60.6
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.0e-30 137.1 142 57.7
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 3.0e-30 135.6 132 59.8
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 6.7e-30 134.4 127 60.6
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.8e-30 134.0 131 58.8
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 8.8e-30 134.0 137 54.7
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.5e-29 133.3 119 62.2
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 3.3e-29 132.1 131 55.7
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 1.3e-28 130.2 141 53.2
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.7e-28 128.6 131 55.7
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 6.3e-28 127.9 127 56.7
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 6.3e-28 127.9 136 51.5
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.8e-27 126.3 133 51.9
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 5.3e-27 124.8 126 56.3
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 5.3e-27 124.8 141 53.2
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 7.0e-27 124.4 147 51.7
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 7.0e-27 124.4 130 55.4
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 9.1e-27 124.0 125 56.0
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.6e-26 123.2 146 51.4
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.0e-26 122.9 145 50.3
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 2.0e-26 122.9 142 53.5
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 2.0e-26 122.9 128 57.0
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 3.5e-26 122.1 133 54.9
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 7.7e-26 120.9 133 55.6
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 1.3e-25 120.2 138 49.3
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.3e-25 120.2 145 49.0
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.7e-25 119.8 136 52.2
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 2.2e-25 119.4 137 50.4
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 2.2e-25 119.4 124 54.8
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.2e-25 119.4 137 53.3
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 3.8e-25 118.6 133 53.4
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 3.8e-25 118.6 145 48.3
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 3.8e-25 118.6 133 52.6
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 3.8e-25 118.6 127 55.1
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 6.5e-25 117.9 138 50.0
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.5e-25 117.9 121 54.5
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 8.5e-25 117.5 127 54.3
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 8.5e-25 117.5 142 51.4
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.9e-24 116.3 140 49.3
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 5.5e-24 114.8 142 47.9
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 7.2e-24 114.4 124 50.0
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 7.2e-24 114.4 127 53.5
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.6e-23 113.2 169 42.0
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.6e-23 113.2 145 48.3
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.6e-23 113.2 126 52.4
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 2.7e-23 112.5 131 48.1
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 3.6e-23 112.1 139 50.4
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 3.6e-23 112.1 133 50.4
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 3.6e-23 112.1 121 52.9
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 8.0e-23 110.9 125 52.8
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 8.0e-23 110.9 122 54.1
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 8.0e-23 110.9 134 50.7
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.0e-22 110.5 125 51.2
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.0e-22 110.5 139 47.5
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.4e-22 110.2 154 46.8
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 2.3e-22 109.4 122 49.2
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 2.3e-22 109.4 133 50.4
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 3.0e-22 109.0 125 50.4
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.0e-22 108.6 125 50.4
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 5.2e-22 108.2 125 50.4
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 5.2e-22 108.2 122 53.3
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 5.2e-22 108.2 127 44.9
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 6.8e-22 107.8 138 46.4
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 6.8e-22 107.8 144 48.6
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.5e-21 106.7 126 48.4
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 7.5e-21 104.4 125 51.2
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 2.8e-20 102.4 129 47.3
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 6.3e-20 101.3 141 46.8
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 1.1e-19 100.5 126 45.2
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.4e-19 100.1 125 42.4
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.4e-19 99.4 117 52.1
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 7.0e-19 97.8 139 43.2
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 9.1e-19 97.4 119 52.1
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.2e-18 97.1 128 48.4
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.6e-18 96.7 128 43.8
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.6e-18 96.7 130 44.6
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 2.0e-18 96.3 139 42.4
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 3.5e-18 95.5 139 43.2
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 3.5e-18 95.5 124 46.0
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.5e-18 95.5 116 50.9
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 5.9e-18 94.7 131 47.3
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 5.9e-18 94.7 119 50.4
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.3e-17 93.6 128 45.3
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 2.9e-17 92.4 112 51.8
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 8.6e-17 90.9 110 47.3
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.1e-16 90.5 137 40.1
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.1e-16 90.5 137 40.1
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 4.2e-16 88.6 117 43.6
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 7.2e-16 87.8 201 36.8
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.8e-15 85.9 216 32.4
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 4.7e-15 85.1 138 39.1
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 6.1e-15 84.7 125 42.4
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 6.1e-15 84.7 134 41.8
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 8.0e-15 84.3 125 41.6
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.0e-14 84.0 138 39.1
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 3.0e-14 82.4 137 38.0
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 3.0e-14 82.4 137 38.0
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 3.0e-14 82.4 137 38.0
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 5.2e-14 81.6 133 37.6
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 5.7e-13 78.2 183 33.9
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.2e-12 76.3 127 40.9
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 2.2e-12 76.3 123 42.3
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 1.1e-11 73.9 131 34.4
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 5.4e-11 71.6 125 39.2
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 2.7e-10 69.3 71 49.3
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 4.5e-10 68.6 129 36.4
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.3e-09 67.0 137 34.3
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 3.8e-09 65.5 136 33.8
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 7.3e-08 61.2 90 42.2
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.2e-07 60.5 104 45.2
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.8e-07 59.3 88 42.0
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 4.0e-06 55.5 72 44.4


User provided reference genes

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