Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p048978 Quercus lobata HOM05D003351 ORTHO05D003806 5.7e-83 310.8 154 100.0
QL08p048955 Quercus lobata HOM05D003351 ORTHO05D003806 7.5e-51 204.1 135 79.3
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.8e-36 156.4 106 72.6
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 7.6e-35 151.0 103 68.9
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 1.3e-34 150.2 151 53.6
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 1.9e-33 146.4 103 67.0
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 3.2e-33 145.6 103 68.0
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.2e-33 145.6 103 68.0
FAN01G2146 Fragaria x ananassa HOM05D003351 ORTHO05D003806 4.1e-33 145.2 102 68.6
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 4.1e-33 145.2 104 66.3
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 4.1e-33 145.2 100 68.0
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 5.4e-33 144.8 103 68.0
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.4e-33 144.8 103 68.0
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 7.1e-33 144.4 103 67.0
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 1.6e-32 143.3 101 67.3
MD01G1058500 Malus domestica HOM05D003351 ORTHO05D003806 1.6e-32 143.3 103 65.0
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 2.1e-32 142.9 100 67.0
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 2.7e-32 142.5 132 56.1
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 3.5e-32 142.1 103 67.0
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 6.0e-32 141.4 103 64.1
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 7.8e-32 141.0 103 66.0
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 7.8e-32 141.0 100 65.0
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 7.8e-32 141.0 104 64.4
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 1.0e-31 140.6 103 61.2
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 1.3e-31 140.2 106 66.0
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 1.7e-31 139.8 103 63.1
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 1.7e-31 139.8 100 64.0
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 3.0e-31 139.0 103 63.1
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 3.9e-31 138.7 103 67.0
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 5.1e-31 138.3 132 53.8
Haze_15493 Corylus avellana HOM05D003351 ORTHO05D003806 5.1e-31 138.3 84 79.8
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 6.6e-31 137.9 103 64.1
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 6.6e-31 137.9 103 60.2
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.1e-30 137.1 100 63.0
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 1.9e-30 136.3 105 61.9
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.9e-30 136.3 103 63.1
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 2.5e-30 136.0 103 63.1
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 2.5e-30 136.0 99 60.6
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 2.5e-30 136.0 100 62.0
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.3e-30 135.6 110 63.6
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 3.3e-30 135.6 100 63.0
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 3.3e-30 135.6 103 63.1
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 3.3e-30 135.6 103 63.1
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 4.3e-30 135.2 100 62.0
HanXRQChr04g0121471 Helianthus annuus HOM05D003351 ORTHO05D003806 4.3e-30 135.2 101 64.4
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.3e-30 135.2 148 49.3
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 4.3e-30 135.2 103 63.1
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 5.6e-30 134.8 105 59.0
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 7.3e-30 134.4 103 65.0
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 7.3e-30 134.4 101 62.4
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 9.6e-30 134.0 100 61.0
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 9.6e-30 134.0 103 62.1
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 1.2e-29 133.7 99 64.6
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 1.6e-29 133.3 101 65.3
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 1.6e-29 133.3 101 63.4
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 1.6e-29 133.3 103 62.1
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 2.8e-29 132.5 131 51.9
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 4.7e-29 131.7 103 58.3
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 6.2e-29 131.3 103 60.2
CiPaw.01G060500 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.4e-28 130.2 86 73.3
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.4e-28 130.2 103 57.3
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.4e-28 130.2 103 57.3
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 1.8e-28 129.8 99 62.6
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 2.4e-28 129.4 100 60.0
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 3.1e-28 129.0 100 61.0
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 3.1e-28 129.0 104 63.5
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 4.0e-28 128.6 103 61.2
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 4.0e-28 128.6 103 61.2
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 5.2e-28 128.3 117 59.0
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 6.8e-28 127.9 103 57.3
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 6.8e-28 127.9 103 61.2
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 1.2e-27 127.1 103 62.1
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 2.0e-27 126.3 127 51.2
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 2.6e-27 125.9 103 61.2
arahy.Tifrunner.gnm1.ann1.74NP28 Arachis hypogaea HOM05D003351 ORTHO05D003806 3.4e-27 125.6 87 65.5
Glyma.18G232300 Glycine max HOM05D003351 ORTHO05D003806 3.4e-27 125.6 84 69.0
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 3.4e-27 125.6 103 61.2
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 4.4e-27 125.2 103 61.2
arahy.Tifrunner.gnm1.ann1.CI504D Arachis hypogaea HOM05D003351 ORTHO05D003806 7.6e-27 124.4 87 64.4
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 7.6e-27 124.4 100 62.0
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 9.9e-27 124.0 103 57.3
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 2.2e-26 122.9 103 61.2
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 3.8e-26 122.1 103 57.3
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 3.8e-26 122.1 100 57.0
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 4.9e-26 121.7 103 57.3
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 4.9e-26 121.7 100 58.0
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 6.4e-26 121.3 103 58.3
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 8.4e-26 120.9 102 59.8
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 1.1e-25 120.6 99 58.6
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 2.4e-25 119.4 103 60.2
TPR.G40156 Trifolium pratense HOM05D003351 ORTHO05D003806 3.2e-25 119.0 119 50.4
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 9.3e-25 117.5 103 57.3
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 9.3e-25 117.5 110 53.6
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 1.2e-24 117.1 103 57.3
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 2.1e-24 116.3 151 44.4
Psat0s3577g0120 Pisum sativum HOM05D003351 ORTHO05D003806 2.7e-24 115.9 88 59.1
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 4.6e-24 115.2 98 55.1
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 6.0e-24 114.8 150 45.3
Ca_27001_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 6.0e-24 114.8 84 63.1
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 6.0e-24 114.8 103 52.4
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 1.3e-23 113.6 106 53.8
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 3.9e-23 112.1 151 44.4
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 3.9e-23 112.1 106 52.8
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 3.9e-23 112.1 106 55.7
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 5.1e-23 111.7 103 56.3
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 8.7e-23 110.9 107 52.3
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.5e-22 110.2 150 43.3
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.5e-22 109.4 145 44.1
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 2.5e-22 109.4 146 43.2
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 3.3e-22 109.0 103 49.5
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 4.3e-22 108.6 150 42.0
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 4.3e-22 108.6 150 41.3
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 7.3e-22 107.8 127 44.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 9.6e-22 107.5 145 43.4
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 9.6e-22 107.5 104 54.8
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 2.1e-21 106.3 103 59.2
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 6.2e-21 104.8 113 46.9
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 8.1e-21 104.4 106 50.0
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 5.3e-20 101.7 144 41.7
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.5e-19 100.1 146 40.4
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 2.6e-19 99.4 103 50.5
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 7.6e-19 97.8 143 41.3
SEGI_17243 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 1.3e-18 97.1 84 56.0
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 2.9e-18 95.9 113 47.8
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 2.9e-18 95.9 114 44.7
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-17 94.0 113 46.9
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 1.1e-17 94.0 113 46.9
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 1.1e-17 94.0 113 47.8
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 3.2e-17 92.4 92 48.9
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 5.4e-17 91.7 67 58.2
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-15 87.4 113 45.1
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 2.3e-15 86.3 151 36.4
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 3.0e-15 85.9 107 45.8
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 3.0e-15 85.9 109 45.9
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 6.6e-15 84.7 102 46.1
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 6.6e-15 84.7 84 50.0
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 8.7e-15 84.3 146 37.7
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.9e-14 83.2 67 59.7
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 2.5e-14 82.8 100 46.0
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 2.5e-14 82.8 101 44.6
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.6e-13 80.1 90 47.8
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 2.8e-13 79.3 103 41.7
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 6.2e-13 78.2 106 42.5
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 9.0e-12 74.3 87 47.1
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 2.6e-11 72.8 65 61.5
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 4.5e-11 72.0 117 35.9
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 5.8e-11 71.6 50 66.0
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 9.9e-11 70.9 98 45.9
BcaB01g02160 Brassica carinata HOM05D003351 ORTHO05D003806 1.9e-09 66.6 88 45.5
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 7.1e-09 64.7 106 34.9
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 3.5e-08 62.4 113 36.3
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 6.0e-08 61.6 85 32.9
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 2.3e-07 59.7 55 50.9
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 3.0e-07 59.3 98 37.8
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 3.9e-07 58.9 193 28.5
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 3.3e-06 55.8 108 29.6


User provided reference genes

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