Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1431.0 748 100.0
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1273.1 751 88.7
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1270.8 751 88.4
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1270.0 745 88.6
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1216.8 751 84.4
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1216.1 751 84.6
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1215.3 751 84.2
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1213.0 753 83.8
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1209.5 746 84.2
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1208.4 751 83.8
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1208.0 741 83.7
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1207.6 733 84.2
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1206.4 748 84.0
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1206.0 733 84.2
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1201.0 749 83.8
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1200.3 748 82.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1199.9 741 83.8
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1198.7 743 83.3
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1196.8 741 83.0
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1196.4 748 82.5
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1196.0 744 82.7
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1195.3 760 82.8
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1192.6 744 82.7
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1192.2 751 81.6
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1192.2 747 82.3
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1191.0 753 81.7
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1191.0 744 82.0
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1189.9 744 83.2
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1186.4 753 81.0
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1186.0 747 82.1
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1185.6 760 82.0
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1184.9 744 82.3
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1182.5 737 82.2
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1181.8 737 82.1
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1181.8 744 81.6
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1181.4 744 81.5
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1181.4 737 82.2
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1180.6 740 81.9
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 737 82.0
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 737 82.1
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 744 81.7
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 740 82.7
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1179.1 737 82.0
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1176.0 737 82.1
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1171.4 732 82.5
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1168.7 742 81.1
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1168.7 746 81.0
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1166.0 744 81.9
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1164.4 739 81.3
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1163.7 747 81.0
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1162.5 743 79.8
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 727 81.3
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1160.2 727 81.2
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1157.9 735 81.0
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1157.5 731 80.6
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1157.5 731 80.6
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1157.1 731 80.3
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1157.1 749 80.4
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1156.4 735 80.8
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1156.0 731 80.6
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1155.2 731 80.4
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1153.7 746 80.0
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1152.5 743 79.0
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1150.6 744 80.4
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1144.8 731 79.5
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1144.0 733 79.4
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1143.6 731 79.9
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1140.9 724 81.8
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1137.5 727 80.6
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1136.3 738 79.7
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1134.0 737 80.7
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1134.0 738 79.5
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1132.9 738 79.4
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 736 79.5
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1130.9 743 78.2
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1129.8 738 79.1
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1129.0 731 78.7
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1127.5 744 78.2
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1126.3 738 78.9
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1125.2 732 78.6
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 744 78.0
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 707 80.6
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1123.2 769 76.6
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1123.2 769 76.6
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1117.4 745 77.9
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1116.3 746 77.9
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1116.3 744 78.4
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1112.1 743 77.4
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1110.1 745 76.6
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1107.0 745 76.5
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1105.9 721 78.9
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1104.0 744 76.3
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 0.0e+00 1083.2 745 73.6
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1082.0 729 75.7
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 6.6e-310 1067.0 738 74.3
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.5e-309 1065.1 745 74.5
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 8.1e-308 1060.1 748 72.7
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 1.8e-307 1058.9 743 72.9
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 1.3e-305 1052.7 692 78.9
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 2.4e-304 1048.5 753 71.3
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.0e-298 1028.9 750 69.3
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 5.8e-298 1027.3 720 75.3
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.4e-297 1023.5 741 71.5
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 4.2e-296 1021.1 736 69.6
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 2.8e-292 1008.4 749 71.3
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 1.8e-291 1005.7 755 69.9
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 8.4e-289 996.9 716 72.8
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 6.0e-287 990.7 741 70.6
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.5e-285 986.1 663 76.0
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.2e-280 968.4 726 68.5
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.2e-279 966.5 661 74.6
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 9.6e-269 930.2 749 67.2
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 2.5e-253 879.0 727 61.6
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 3.8e-249 865.1 727 68.4
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 4.2e-248 861.7 736 60.1
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 2.6e-245 852.4 728 60.6
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 4.4e-245 851.7 737 63.4
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.4e-238 830.1 568 76.2
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.1e-237 827.0 653 66.6
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 1.3e-228 797.0 526 78.9
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 3.0e-214 749.2 433 89.1
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 4.1e-211 738.8 548 70.8
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 7.8e-210 734.6 890 46.9
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 2.6e-189 666.4 385 89.1
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 1.7e-180 637.1 413 78.7
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 6.7e-169 598.6 329 92.7
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 2.9e-164 583.2 393 76.6
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 7.9e-162 575.1 542 56.8
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 7.4e-160 568.5 780 45.3
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 2.4e-158 563.5 537 55.1
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.1e-155 554.7 743 45.5
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 2.5e-155 553.5 543 55.1
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 8.7e-145 518.5 357 74.5
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 4.1e-142 509.6 509 54.4
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 3.3e-136 490.0 327 78.3
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 2.2e-132 477.2 738 37.9
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 1.4e-126 458.0 840 34.2
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.5e-123 448.0 313 74.4
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 7.7e-117 425.6 495 52.9
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 2.5e-115 420.6 325 70.2
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 7.2e-115 419.1 274 79.2
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 6.8e-113 412.5 270 80.0
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.6e-112 410.6 270 79.6
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 1.0e-108 398.7 272 74.3
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 1.1e-107 395.2 209 94.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 7.8e-101 372.5 236 80.9
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 2.5e-99 367.5 233 80.7
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 2.5e-99 367.5 233 80.7
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 8.3e-95 352.4 418 52.2
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 4.6e-93 346.7 212 84.0
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 4.7e-90 336.7 184 90.2
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 3.1e-89 334.0 189 87.8
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 1.9e-51 208.4 187 60.4
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 3.3e-51 207.6 123 82.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 2.6e-48 198.0 149 69.8
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 3.4e-48 197.6 163 62.0
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 6.4e-47 193.4 217 50.7
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 4.6e-45 187.2 120 80.8
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 2.4e-41 174.9 128 68.0
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.3e-39 169.1 260 47.3
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 4.2e-38 164.1 100 91.0
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 7.4e-35 153.3 112 67.0
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 3.7e-34 151.0 86 94.2
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 3.1e-33 147.9 804 21.5
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.5e-31 139.8 96 74.0
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 1.1e-30 139.4 140 62.1
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.8e-25 122.1 78 82.1
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 6.7e-20 103.6 68 70.6
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 6.7e-20 103.6 98 59.2
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 7.4e-19 100.1 82 68.3
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 7.4e-19 100.1 82 68.3
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 6.3e-18 97.1 91 58.2
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 7.2e-14 83.6 59 72.9
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 1.2e-13 82.8 57 73.7
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 6.7e-12 77.0 51 68.6
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 5.3e-09 67.4 53 64.2
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 5.3e-09 67.4 53 64.2
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 5.3e-09 67.4 53 64.2
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 7.0e-09 67.0 44 70.5
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 1.6e-08 65.9 53 62.3
MCO01G605 Micromonas commoda HOM05D002391 ORTHO05D004870 7.2e-06 57.0 712 18.7
Medtr0014s0110 Medicago truncatula HOM05D021939 ORTHO05D002335 9.4e-06 56.6 123 36.6


User provided reference genes

Program Settings