Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 1.1e-181 639.8 330 100.0
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 5.3e-102 375.2 301 69.4
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.8e-95 352.1 294 66.0
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 3.4e-85 319.3 308 62.3
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 6.7e-73 278.5 306 58.5
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.1e-67 261.2 305 53.4
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 1.0e-65 254.6 286 53.5
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 4.4e-64 249.2 303 54.1
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 4.4e-64 249.2 286 51.0
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 5.7e-64 248.8 312 52.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 7.4e-64 248.4 284 52.8
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.7e-63 247.3 310 48.4
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.8e-63 246.5 308 52.6
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.8e-63 246.5 308 52.6
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.1e-62 244.6 308 52.3
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.4e-62 244.2 294 50.3
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.4e-62 243.4 312 53.8
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 9.1e-62 241.5 293 55.6
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.5e-61 239.6 308 51.6
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-60 237.7 280 50.0
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-60 237.7 280 50.0
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 5.0e-60 235.7 296 54.4
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.9e-59 233.8 303 51.2
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 4.2e-59 232.6 292 52.1
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 7.2e-59 231.9 301 50.8
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 7.2e-59 231.9 290 51.4
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.6e-58 230.7 310 51.0
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 3.4e-56 223.0 295 49.8
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 3.4e-56 223.0 294 44.9
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 7.5e-56 221.9 283 45.9
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.1e-54 216.1 270 52.6
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 9.1e-54 214.9 274 48.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 3.5e-53 213.0 300 51.0
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 7.7e-53 211.8 319 47.6
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 1.7e-52 210.7 302 51.0
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.7e-52 210.7 305 48.9
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 3.8e-52 209.5 304 49.3
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.5e-51 206.8 276 47.5
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 5.5e-51 205.7 307 49.2
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 5.5e-51 205.7 296 48.3
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 9.4e-51 204.9 290 49.3
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.7e-50 203.4 290 49.0
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 6.1e-50 202.2 290 48.6
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 1.4e-49 201.1 275 44.4
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 8.8e-49 198.4 278 48.2
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.6e-48 196.8 304 46.7
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 1.6e-45 187.6 283 48.4
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 4.5e-45 186.0 282 44.3
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 5.9e-45 185.7 321 45.2
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 8.6e-44 181.8 275 47.3
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.1e-43 181.4 289 42.6
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 4.2e-43 179.5 276 47.5
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.6e-42 177.6 298 45.0
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.7e-40 169.1 264 43.2
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 5.7e-40 169.1 264 42.8
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 6.3e-39 165.6 279 46.6
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 6.3e-39 165.6 264 43.6
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.6e-34 149.8 275 39.3
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.0e-33 148.3 295 40.3
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 1.5e-32 144.4 322 34.5
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 3.4e-32 143.3 247 44.5
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 4.4e-32 142.9 249 44.2
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.7e-31 139.8 292 39.0
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 8.3e-31 138.7 290 37.2
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 1.4e-30 137.9 277 39.0
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 5.4e-30 136.0 299 36.1
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 2.7e-29 133.7 244 38.9
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.5e-29 133.3 263 36.5
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 6.0e-29 132.5 313 36.4
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.7e-28 131.0 253 41.9
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.7e-28 131.0 305 35.1
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.3e-28 130.6 317 36.6
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 4.7e-26 122.9 322 34.2
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.1e-25 121.7 289 33.9
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 5.2e-25 119.4 300 35.3
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.8e-25 119.0 293 36.5
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 1.5e-24 117.9 272 37.1
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.0e-24 117.5 315 35.2
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 9.8e-24 115.2 243 39.1
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 2.9e-23 113.6 273 35.2
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.9e-22 110.9 296 35.5
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 1.6e-21 107.8 282 33.7
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 2.1e-21 107.5 282 32.6
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.7e-21 107.1 291 34.4
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 1.0e-20 105.1 261 37.2
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.3e-20 104.0 293 33.8
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 3.0e-20 103.6 283 35.0
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 8.6e-20 102.1 278 33.5
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 5.6e-19 99.4 284 33.1
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 5.6e-19 99.4 268 34.7
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 9.5e-19 98.6 270 32.6
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 3.6e-18 96.7 277 31.8
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 3.6e-18 96.7 277 31.0
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 2.3e-17 94.0 294 31.6
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 6.8e-17 92.4 273 30.0
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 6.8e-17 92.4 278 30.2
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.2e-16 91.7 296 31.4
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.5e-16 91.3 156 46.2
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.5e-16 91.3 200 36.5
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 3.4e-16 90.1 283 31.4
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 3.4e-16 90.1 283 31.1
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 5.8e-16 89.4 287 31.4
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 5.8e-16 89.4 256 31.6
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 9.9e-16 88.6 290 31.4
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 1.3e-15 88.2 273 29.7
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.7e-15 87.8 287 31.0
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.9e-15 86.3 266 32.3
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 6.4e-15 85.9 216 35.2
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 2.1e-13 80.9 258 30.2
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 4.6e-13 79.7 272 27.2
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 7.8e-13 79.0 368 30.4
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 2.3e-12 77.4 263 28.1
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 1.5e-11 74.7 373 29.2
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 2.5e-11 73.9 279 30.1
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 5.6e-11 72.8 202 32.7
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.6e-10 71.2 229 30.1
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 2.1e-10 70.9 263 28.1
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 3.6e-10 70.1 263 29.3
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 8.1e-10 68.9 298 26.5
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 8.1e-10 68.9 266 26.3
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 5.2e-09 66.2 333 25.2
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 2.6e-08 63.9 269 29.0
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 4.4e-08 63.2 81 45.7
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 7.6e-08 62.4 262 25.2
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 9.9e-08 62.0 297 26.9
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 2.2e-07 60.8 229 30.1
ClCG05G000550 Citrullus lanatus HOM05D000634 ORTHO05D028992 6.4e-07 59.3 303 26.7
Lsat_1_v5_gn_7_2960 Lactuca sativa HOM05D002069 ORTHO05D001421 1.1e-06 58.5 170 30.6
CsaV3_3G007780 Cucumis sativus L. HOM05D000634 ORTHO05D028992 5.4e-06 56.2 185 31.4
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 7.1e-06 55.8 81 40.7


User provided reference genes

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