Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 7.6e-156 554.3 396 100.0
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-51 208.0 431 44.5
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 4.5e-47 193.0 258 52.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 8.4e-46 188.7 245 58.8
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 4.2e-45 186.4 256 53.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 6.0e-44 182.6 199 59.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.0e-43 180.3 410 50.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.1e-42 178.3 243 51.4
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-42 177.6 255 53.7
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.6e-42 176.0 210 56.2
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 1.3e-41 174.9 259 47.5
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.3e-41 174.9 210 55.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.1e-40 171.8 197 57.4
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.4e-40 170.6 210 54.3
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.1e-40 170.2 204 55.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 9.0e-40 168.7 262 45.8
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.0e-39 167.5 267 48.7
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.5e-39 166.4 396 37.4
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.8e-38 163.3 274 44.2
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.1e-37 161.8 391 42.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 5.5e-37 159.5 262 53.8
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.9e-36 155.6 264 46.6
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 3.0e-35 153.7 266 42.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.0e-35 153.7 262 50.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 5.1e-35 152.9 242 50.4
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.1e-35 152.9 209 53.1
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.7e-35 152.5 242 48.8
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.5e-34 151.4 293 45.4
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.5e-34 150.6 258 46.5
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-34 150.6 258 46.5
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-34 150.6 258 46.5
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 3.3e-34 150.2 247 42.9
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.7e-34 149.4 247 44.5
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 5.7e-34 149.4 433 48.3
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.2e-33 146.0 259 47.1
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 8.2e-33 145.6 211 46.4
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-32 144.4 264 44.7
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-32 144.4 261 46.0
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.8e-32 144.4 263 41.4
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.9e-32 142.5 211 45.0
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 9.0e-32 142.1 206 48.1
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.2e-31 141.7 261 46.0
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.0e-31 141.0 261 46.0
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.6e-31 140.6 261 44.4
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.4e-31 140.2 268 41.0
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.4e-31 140.2 254 42.1
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 4.5e-31 139.8 201 47.8
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 5.8e-31 139.4 265 43.0
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.2e-30 137.5 262 45.4
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 5.0e-30 136.3 285 44.6
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 6.5e-30 136.0 208 49.0
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.0e-27 127.1 232 42.2
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.8e-25 120.6 270 35.9
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.7e-25 120.2 270 43.7
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.4e-24 118.2 278 37.1
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.4e-24 117.5 223 44.4
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.4e-24 117.5 223 44.4
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.4e-24 117.5 210 46.7
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.4e-24 117.5 230 41.3
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 3.1e-24 117.1 269 39.0
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.1e-24 116.7 250 38.4
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 6.9e-24 115.9 210 42.4
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.4e-23 113.6 246 39.4
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.0e-22 112.1 270 36.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 8.5e-22 109.0 141 53.2
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.5e-21 107.5 211 37.0
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 7.2e-21 105.9 245 37.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 1.6e-20 104.8 269 34.2
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 3.6e-20 103.6 206 41.3
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 3.6e-20 103.6 135 48.9
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.1e-20 102.8 115 54.8
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.0e-19 102.1 128 50.0
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.4e-19 101.7 201 42.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.8e-19 101.3 271 34.3
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.8e-19 101.3 196 44.9
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.3e-19 100.9 231 39.0
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 5.1e-19 99.8 136 49.3
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 8.8e-19 99.0 286 33.9
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.5e-18 98.2 196 40.8
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.0e-18 97.8 284 33.8
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-18 97.8 150 43.3
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 2.5e-18 97.4 201 40.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.3e-18 97.1 200 41.0
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.3e-17 95.1 263 34.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.8e-17 94.0 255 32.9
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 6.3e-17 92.8 262 34.0
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.4e-16 91.7 262 38.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.8e-16 91.3 236 36.0
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.1e-16 90.5 205 39.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.1e-16 90.1 250 34.8
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 4.1e-16 90.1 137 48.2
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 6.9e-16 89.4 181 41.4
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.6e-15 87.4 254 35.4
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.4e-15 87.0 242 34.7
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 7.7e-15 85.9 253 35.2
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.7e-14 84.7 188 39.4
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.7e-14 84.7 150 41.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 2.9e-14 84.0 161 41.6
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.0e-14 83.2 136 44.9
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 6.5e-14 82.8 204 36.3
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 2.5e-13 80.9 143 42.0
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.5e-13 80.9 122 49.2
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 3.2e-13 80.5 200 34.5
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 5.5e-13 79.7 191 36.6
CiPaw.02G042900 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.4e-13 79.0 195 36.9
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.2e-12 78.6 265 32.1
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-12 78.6 265 32.1
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.2e-12 78.6 243 29.6
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.6e-12 78.2 255 32.9
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 2.7e-12 77.4 265 33.6
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 3.6e-12 77.0 196 36.2
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 3.6e-12 77.0 196 36.2
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.6e-12 77.0 268 33.2
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.6e-12 77.0 248 32.3
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 4.7e-12 76.6 240 32.5
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 6.1e-12 76.3 255 32.5
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 6.1e-12 76.3 195 36.4
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 7.9e-12 75.9 252 33.7
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 1.0e-11 75.5 163 42.9
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.4e-11 75.1 252 33.7
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-11 74.3 253 33.6
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 3.0e-11 73.9 246 33.3
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 3.0e-11 73.9 158 39.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.0e-11 73.9 162 39.5
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 3.0e-11 73.9 195 35.9
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 3.0e-11 73.9 195 35.9
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 5.1e-11 73.2 132 37.1
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 5.1e-11 73.2 175 37.7
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.0e-10 71.2 227 36.6
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 3.3e-10 70.5 184 34.2
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.8e-09 67.4 188 31.9
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.8e-09 67.4 125 40.8
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 6.3e-09 66.2 211 30.8
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 8.2e-09 65.9 127 37.8
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.8e-08 64.7 170 35.3
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.8e-08 64.7 246 29.3
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 2.4e-08 64.3 127 37.0
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 2.4e-08 64.3 123 34.1
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 3.1e-08 63.9 126 37.3
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 4.1e-08 63.5 181 34.8
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.3e-08 63.2 127 33.1
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 5.3e-08 63.2 137 38.0
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 7.0e-08 62.8 127 37.8
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.0e-08 62.8 119 36.1
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 9.1e-08 62.4 199 31.7
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.2e-07 62.0 124 35.5
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.2e-07 62.0 190 35.8
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.5e-07 61.6 193 30.6
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.5e-07 61.6 244 28.3
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 1.5e-07 61.6 126 38.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.5e-07 61.6 121 35.5
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.5e-07 61.6 158 38.6
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.0e-07 61.2 151 29.8
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.0e-07 61.2 240 28.8
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.6e-07 60.8 118 34.7
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 2.6e-07 60.8 184 33.7
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.5e-07 60.5 123 31.7
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 3.5e-07 60.5 116 37.1
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 4.5e-07 60.1 248 25.8
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 5.9e-07 59.7 125 38.4
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 5.9e-07 59.7 154 34.4
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 5.9e-07 59.7 127 30.7
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 5.9e-07 59.7 249 27.3
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.0e-06 58.9 251 28.3
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 1.3e-06 58.5 124 33.1
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.7e-06 58.2 128 33.6
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 2.2e-06 57.8 209 26.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.2e-06 57.8 119 35.3
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 3.8e-06 57.0 121 32.2
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 3.8e-06 57.0 116 32.8
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 6.5e-06 56.2 112 33.9
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 6.5e-06 56.2 109 38.5
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 6.5e-06 56.2 154 31.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 8.5e-06 55.8 113 36.3


User provided reference genes

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