Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1508.8 867 100.0
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1256.5 868 83.2
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1236.5 939 75.8
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1206.4 868 83.3
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1177.9 869 74.6
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1169.1 869 74.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1159.8 879 74.4
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1157.9 880 74.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1155.6 879 74.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1155.6 869 77.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 871 73.6
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1153.7 870 78.7
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1151.0 868 73.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 858 73.9
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1144.8 873 77.1
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 872 74.2
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 870 76.2
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1140.6 870 72.1
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 871 75.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 883 72.0
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1138.6 870 72.6
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 872 71.7
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 870 75.5
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 875 74.5
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 858 74.2
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 856 73.6
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 871 71.8
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 857 74.9
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1133.6 856 73.5
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1130.5 856 73.2
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1128.2 876 74.4
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 886 73.8
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 856 73.0
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 869 77.0
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 863 73.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 796 76.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 856 72.8
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1123.2 868 71.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 878 73.0
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 864 76.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 878 73.0
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 873 74.9
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1109.4 878 72.9
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 887 71.4
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 868 71.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 826 71.8
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1088.6 879 68.3
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1087.0 864 71.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 877 69.1
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1082.4 844 72.2
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 5.9e-312 1074.7 866 69.2
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 1.2e-311 1073.2 883 67.7
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 1.2e-310 1069.7 883 67.7
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 5.9e-310 1067.4 867 70.6
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 7.7e-310 1067.0 883 67.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-309 1066.6 794 74.2
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 2.2e-309 1065.4 876 70.5
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 2.9e-309 1065.1 866 69.6
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 2.9e-309 1065.1 870 69.5
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.8e-309 1064.7 795 73.8
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 8.5e-309 1063.5 877 68.1
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 874 67.2
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.6e-307 1059.3 870 68.7
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.0e-306 1056.6 869 67.2
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 1.8e-306 1055.8 861 68.4
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.5e-305 1052.7 851 68.2
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.5e-305 1052.7 865 68.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 2.5e-305 1052.0 864 67.6
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.5e-305 1052.0 867 67.6
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 7.4e-305 1050.4 860 68.0
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 9.7e-305 1050.0 851 68.0
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 9.7e-305 1050.0 851 68.0
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 1.7e-304 1049.3 863 67.6
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 4.8e-304 1047.7 877 66.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 3.1e-303 1045.0 882 67.6
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 2.6e-302 1042.0 869 66.3
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 894 65.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 2.2e-301 1038.9 857 65.9
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 1.4e-300 1036.2 879 65.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 1.4e-300 1036.2 894 65.5
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 3.2e-300 1035.0 868 66.6
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.1e-299 1032.3 795 69.7
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.7e-299 1031.9 879 65.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 1.4e-298 1029.6 869 66.2
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 5.1e-298 1027.7 908 63.4
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.0e-297 1025.8 706 75.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 3.3e-297 1025.0 864 69.0
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.5e-294 1016.1 934 63.2
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 1.0e-293 1013.4 875 64.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 8.5e-293 1010.4 769 70.0
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.7e-291 1004.6 889 64.6
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 3.7e-288 995.0 704 72.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.4e-287 992.3 857 64.8
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.0e-285 986.9 873 63.1
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 8.8e-282 973.8 689 73.9
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 6.3e-280 967.6 646 77.6
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.1e-279 964.9 689 73.3
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.0e-278 962.6 874 61.8
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.4e-273 944.9 660 74.2
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.3e-272 943.3 965 62.9
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.4e-271 939.1 850 59.4
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.6e-270 936.4 869 61.3
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 6.8e-266 921.0 866 62.6
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.7e-264 916.4 767 67.9
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 3.9e-261 905.2 796 60.8
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 9.8e-257 890.6 608 75.5
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 4.6e-254 881.7 861 61.8
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.7e-245 853.2 790 56.7
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.2e-234 815.1 792 55.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.9e-232 808.5 792 54.0
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 5.8e-225 785.0 827 51.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.4e-210 736.5 881 53.3
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 3.1e-210 736.1 804 49.4
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.0e-209 733.4 872 53.9
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 8.4e-208 728.0 430 86.7
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.3e-168 597.8 480 68.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.6e-156 557.0 440 69.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 3.5e-137 493.4 357 74.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.1e-126 457.6 310 74.5
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 9.9e-124 448.7 265 84.5
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 5.8e-116 422.9 801 37.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 4.0e-109 400.2 774 34.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 2.6e-100 370.9 374 65.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.9e-87 328.2 428 48.4
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.5e-84 318.5 829 30.8
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.9e-60 236.9 279 53.4
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.5e-58 231.5 203 66.0
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.6e-57 227.6 396 48.7
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.2e-51 208.4 134 76.1
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.2e-50 204.5 189 59.3
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-45 189.1 142 74.6
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 5.0e-43 180.6 125 70.4
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.2e-36 159.5 121 71.1
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.1e-34 152.9 147 57.8
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-34 151.8 147 57.1
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-34 151.8 158 57.0
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.9e-18 99.0 70 74.3
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 6.6e-11 73.9 77 55.8
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 9.9e-07 60.1 61 50.8


User provided reference genes

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