Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 3.8e-31 137.5 68 100.0
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 6.8e-20 100.1 67 71.6
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.8e-20 100.1 67 71.6
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.8e-20 100.1 67 71.6
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 8.8e-20 99.8 66 78.8
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 2.6e-19 98.2 66 77.3
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 3.4e-19 97.8 67 71.6
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 3.4e-19 97.8 67 71.6
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.7e-18 95.5 66 74.2
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 3.7e-18 94.4 65 70.8
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.8e-18 94.0 70 68.6
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.4e-17 92.4 66 69.7
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 5.3e-17 90.5 69 68.1
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 3.5e-16 87.8 70 67.1
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.3e-15 85.9 69 69.6
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.7e-15 85.5 71 69.0
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.7e-13 78.2 71 63.4
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.8e-12 75.5 63 61.9
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 2.3e-12 75.1 85 52.9
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.3e-12 75.1 68 55.9
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 3.0e-12 74.7 47 78.7
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 5.2e-12 73.9 74 63.5
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 6.8e-12 73.6 72 61.1
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 8.8e-12 73.2 72 61.1
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.8e-12 73.2 70 60.0
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 8.8e-12 73.2 70 60.0
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 8.8e-12 73.2 65 66.2
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 8.8e-12 73.2 68 64.7
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.5e-11 72.4 68 57.4
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 2.0e-11 72.0 47 74.5
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 2.0e-11 72.0 47 74.5
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.6e-11 71.6 66 56.1
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.6e-11 71.6 71 59.2
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.6e-11 71.6 71 59.2
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 2.6e-11 71.6 67 59.7
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 2.6e-11 71.6 66 54.5
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.6e-11 71.6 70 61.4
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.4e-11 71.2 67 55.2
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.4e-11 71.2 66 56.1
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 3.4e-11 71.2 44 75.0
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 4.4e-11 70.9 67 58.2
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 4.4e-11 70.9 43 76.7
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.4e-11 70.9 69 55.1
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.4e-11 70.9 71 59.2
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.4e-11 70.9 61 65.6
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.4e-11 70.9 68 51.5
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 5.7e-11 70.5 43 72.1
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.5e-11 70.1 61 55.7
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 9.8e-11 69.7 47 72.3
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 9.8e-11 69.7 47 72.3
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.8e-11 69.7 69 53.6
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 9.8e-11 69.7 69 53.6
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.3e-10 69.3 67 52.2
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 1.7e-10 68.9 44 77.3
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 2.2e-10 68.6 46 73.9
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 2.2e-10 68.6 65 52.3
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 2.8e-10 68.2 44 70.5
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.3e-10 67.0 64 56.2
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 8.3e-10 66.6 70 50.0
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 8.3e-10 66.6 63 57.1
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 1.1e-09 66.2 45 73.3
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.8e-09 65.5 63 55.6
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 2.4e-09 65.1 45 73.3
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 3.1e-09 64.7 45 71.1
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 4.1e-09 64.3 43 74.4
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 7.0e-09 63.5 49 63.3
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 7.0e-09 63.5 66 51.5
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.2e-08 62.8 44 61.4
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 1.2e-08 62.8 48 66.7
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 2.0e-08 62.0 68 55.9
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.7e-08 61.6 69 49.3
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.7e-08 61.6 69 49.3
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 4.5e-08 60.8 66 57.6
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 5.9e-08 60.5 65 52.3
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.9e-08 60.5 69 49.3
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 7.7e-08 60.1 63 54.0
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 7.7e-08 60.1 65 52.3
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 1.0e-07 59.7 70 50.0
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 1.7e-07 58.9 67 49.3
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.7e-07 58.9 65 52.3
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 2.9e-07 58.2 67 49.3
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.9e-07 58.2 43 65.1
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 3.8e-07 57.8 44 68.2
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 3.8e-07 57.8 68 45.6
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 5.0e-07 57.4 54 55.6
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 5.0e-07 57.4 60 51.7
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 6.6e-07 57.0 49 61.2
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 6.6e-07 57.0 44 63.6
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 6.6e-07 57.0 44 56.8
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 8.6e-07 56.6 45 62.2
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 8.6e-07 56.6 54 55.6
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 1.1e-06 56.2 61 50.8
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.1e-06 56.2 39 59.0
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 1.5e-06 55.8 68 50.0
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 1.9e-06 55.5 44 65.9
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 4.2e-06 54.3 65 43.1
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 5.5e-06 53.9 69 46.4
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 7.2e-06 53.5 77 40.3
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 7.2e-06 53.5 46 63.0
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 7.2e-06 53.5 70 47.1
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 9.5e-06 53.1 46 54.3


User provided reference genes

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