Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 0.0e+00 2545.0 1309 100.0
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 0.0e+00 1359.4 990 71.4
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.4e-307 1060.1 865 64.6
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 4.7e-287 991.9 1331 47.6
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 4.6e-282 975.3 1357 46.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.1e-280 970.7 1330 45.3
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.2e-279 967.2 1326 46.5
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 4.4e-269 932.2 1346 45.2
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.3e-265 920.6 1333 45.6
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 6.0e-242 842.0 1295 43.9
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.0e-241 841.3 1337 42.3
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 5.7e-240 835.5 1333 41.9
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 6.3e-239 832.0 1280 44.2
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 5.3e-238 828.9 996 49.2
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.9e-235 820.5 1339 42.9
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.1e-232 811.2 1360 41.3
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 3.2e-227 793.1 1361 41.1
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.6e-216 756.9 1038 43.7
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 7.2e-211 738.8 1339 39.7
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.8e-209 734.2 1361 40.3
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.5e-208 731.1 1351 39.1
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.6e-208 730.3 1336 39.9
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 3.1e-206 723.4 1336 39.7
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.8e-201 707.6 1039 43.7
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 5.2e-201 706.1 984 44.5
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.0e-200 704.1 1377 38.9
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.5e-197 693.0 1218 41.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.0e-196 691.8 1032 43.0
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 6.8e-193 679.1 1322 37.5
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 5.2e-177 626.3 1363 36.2
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 6.0e-149 533.1 1321 33.2
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.2e-144 518.8 1300 34.4
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.0e-144 518.1 1269 34.9
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 4.5e-144 516.9 1325 32.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 4.5e-144 516.9 1338 32.7
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.3e-143 515.4 1315 31.6
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.2e-141 508.8 1289 34.8
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 2.7e-141 507.7 1133 37.7
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 3.0e-140 504.2 1336 33.7
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.8e-137 495.0 977 37.3
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 3.4e-136 490.7 1346 32.5
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 4.9e-135 486.9 887 40.9
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 4.8e-130 470.3 1345 32.3
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 9.0e-129 466.1 1242 34.9
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.0e-128 464.9 1282 35.6
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 2.9e-127 461.1 1245 34.1
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 5.5e-126 456.8 1454 30.1
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 1.6e-122 445.3 1257 33.9
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 1.4e-121 442.2 1244 35.2
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 9.4e-118 429.5 1351 32.7
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 4.6e-117 427.2 1287 34.2
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 3.9e-116 424.1 1227 32.8
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.1e-115 422.5 1360 30.6
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 3.3e-115 421.0 1340 31.3
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 4.3e-115 420.6 1284 32.6
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 3.7e-114 417.5 1277 32.8
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.0e-111 409.5 1253 34.3
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 1.7e-111 408.7 1327 29.8
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 2.2e-111 408.3 1318 30.0
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 5.1e-108 397.1 1375 30.5
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 9.7e-107 392.9 1364 29.3
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 1.2e-101 375.9 1308 30.7
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.8e-95 354.4 1314 28.2
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 8.0e-93 346.7 1314 30.0
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 3.7e-90 337.8 1046 31.4
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 9.1e-81 306.6 1458 25.7
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.0e-80 305.4 1298 31.0
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.8e-79 301.2 1316 27.1
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.3e-78 298.1 1313 30.8
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 3.6e-77 294.7 1325 26.9
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 8.9e-76 290.0 1323 26.9
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 5.4e-73 280.8 791 32.0
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 8.0e-69 266.9 1304 27.0
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 3.4e-67 261.5 1318 25.9
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 2.4e-65 255.4 806 28.3
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 3.6e-61 241.5 1305 25.6
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 4.9e-58 231.1 1311 25.4
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 3.5e-56 224.9 1010 26.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 6.0e-56 224.2 275 56.7
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.7e-55 222.6 1076 25.6
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 4.4e-51 208.0 1295 25.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 6.4e-50 204.1 1286 23.8
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 9.2e-41 173.7 181 60.8
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 6.0e-40 171.0 1345 25.1
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.5e-38 165.6 310 39.0
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.3e-38 164.9 1224 25.3
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 7.3e-38 164.1 962 26.4
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.5e-32 145.2 248 41.5
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.2e-27 130.2 399 32.3
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.2e-24 120.2 180 44.4
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 1.2e-24 120.2 179 44.1
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.7e-24 119.0 193 42.0
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 3.5e-24 118.6 145 47.6
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.3e-21 110.2 101 56.4
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 5.3e-20 104.8 489 25.4
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 9.0e-20 104.0 182 40.7
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 4.5e-19 101.7 188 38.3
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 2.2e-18 99.4 582 25.4
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.1e-17 97.1 1206 23.5
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 3.1e-12 79.0 105 41.0
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 5.3e-12 78.2 264 27.3
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 1.5e-11 76.6 77 53.2
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 2.0e-11 76.3 70 52.9
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 3.4e-11 75.5 128 41.4
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 3.8e-10 72.0 427 25.1
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 6.5e-10 71.2 570 24.2
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 1.9e-09 69.7 451 23.1
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 1.9e-09 69.7 293 25.9
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 5.5e-09 68.2 67 52.2
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.5e-08 65.5 76 48.7
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.5e-08 65.5 76 48.7
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.5e-08 65.5 62 53.2
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 6.1e-08 64.7 78 42.3
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.3e-07 62.8 62 54.8
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 5.1e-07 61.6 155 31.0
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 5.1e-07 61.6 177 31.1
Phvul.006G035050 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 6.7e-07 61.2 55 56.4
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 8.7e-07 60.8 58 53.4
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 2.5e-06 59.3 73 41.1


User provided reference genes

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