Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.9e-63 244.2 114 100.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-50 202.6 110 90.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.0e-49 199.9 110 88.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.0e-49 198.0 110 86.4
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 6.8e-49 197.2 110 86.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.2e-48 196.4 110 86.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.5e-48 196.1 110 84.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 9.8e-48 193.4 110 84.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 9.8e-48 193.4 110 83.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.7e-47 192.6 110 84.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.2e-47 192.2 110 82.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 3.7e-47 191.4 110 84.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 4.9e-47 191.0 110 83.6
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.9e-47 191.0 110 82.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.1e-46 189.9 110 82.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-46 189.9 110 80.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-46 189.9 110 80.9
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-46 189.5 110 80.9
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.4e-46 189.5 110 80.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-46 189.1 110 80.9
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.4e-46 188.7 110 82.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.4e-46 188.7 110 82.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.4e-46 188.7 110 80.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.4e-46 188.7 110 82.7
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.2e-46 188.3 110 79.1
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.2e-46 188.3 110 82.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.2e-46 188.3 110 79.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-46 188.3 110 80.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.4e-46 187.6 110 79.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 82.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 78.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 81.8
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 81.8
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 80.9
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 81.8
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 78.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 7.0e-46 187.2 110 80.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 79.1
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 81.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 9.2e-46 186.8 110 80.9
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.2e-45 186.4 111 81.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.2e-45 186.4 110 80.9
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.6e-45 186.0 110 80.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-45 186.0 110 81.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.0e-45 185.7 110 78.2
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.0e-45 185.7 110 78.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.0e-45 185.7 110 80.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-45 185.7 110 80.9
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.0e-45 185.7 104 84.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.7e-45 185.3 110 80.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.7e-45 185.3 110 80.9
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.5e-45 184.9 110 77.3
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.5e-45 184.9 110 80.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.6e-45 184.5 110 80.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.0e-45 184.1 110 80.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 6.0e-45 184.1 110 80.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 7.8e-45 183.7 110 76.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.8e-45 183.7 110 76.4
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.0e-44 183.3 110 80.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.3e-44 183.0 110 78.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-44 183.0 110 80.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.3e-44 183.0 110 79.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.3e-44 183.0 110 80.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.3e-44 182.2 110 76.4
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.3e-44 182.2 122 69.7
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.0e-44 181.8 110 77.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 3.0e-44 181.8 110 77.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 3.0e-44 181.8 110 77.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.9e-44 181.4 110 78.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.0e-44 181.0 110 78.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 6.6e-44 180.6 110 77.3
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 8.6e-44 180.3 110 78.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-43 179.5 110 79.1
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.9e-43 179.1 110 76.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.3e-43 178.3 110 76.4
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 3.3e-43 178.3 110 75.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 3.3e-43 178.3 110 74.5
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.3e-43 178.3 110 74.5
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.3e-43 178.3 110 74.5
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 4.3e-43 177.9 152 61.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.6e-43 177.6 110 74.5
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 9.5e-43 176.8 110 75.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-42 176.4 110 77.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-42 176.0 110 76.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.6e-42 174.9 104 79.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.6e-42 174.9 104 78.8
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 4.7e-42 174.5 109 75.2
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 8.1e-42 173.7 110 73.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 8.1e-42 173.7 104 76.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.5e-40 167.2 110 74.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 9.8e-40 166.8 110 70.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.9e-39 164.5 153 57.5
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 7.1e-38 160.6 82 87.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.2e-38 160.2 83 89.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.1e-37 159.1 110 71.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.6e-37 157.9 98 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.0e-36 156.8 110 67.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-36 156.4 110 65.5
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.7e-36 156.0 110 69.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-36 155.6 83 84.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.9e-36 154.8 110 60.9
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.9e-36 154.8 98 79.6
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.1e-36 154.5 86 77.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.1e-36 154.5 107 67.3
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.6e-36 153.7 82 82.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.3e-35 151.8 85 78.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.3e-35 151.4 107 65.4
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 7.3e-35 150.6 142 56.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.0e-32 142.5 110 65.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.1e-29 132.5 110 57.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.7e-29 132.1 110 60.9
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 4.6e-29 131.3 100 70.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 7.8e-29 130.6 86 68.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.9e-27 125.9 98 67.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.5e-27 125.6 98 62.2
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-25 119.0 80 75.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-24 115.9 112 55.4
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.2e-23 112.5 85 63.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.2e-23 112.5 110 47.3
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-23 112.1 57 86.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.8e-23 111.7 56 85.7
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-22 109.8 107 46.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.4e-22 109.8 56 80.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.6e-21 106.3 111 52.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.9e-19 99.4 82 48.8
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.3e-18 96.7 62 71.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 6.2e-18 94.4 113 47.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.9e-16 87.0 56 80.4
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-15 85.5 115 42.6
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-14 83.2 48 75.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.2e-14 82.0 86 47.7
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.0e-12 77.0 98 45.9
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.0e-12 75.5 38 81.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.1e-11 73.6 62 61.3
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.3e-10 70.1 50 74.0
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.1e-10 69.3 29 96.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.4e-09 65.9 29 93.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.1e-09 65.5 29 89.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.1e-09 65.5 84 41.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.6e-08 60.8 50 62.0


User provided reference genes

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