Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.7e-135 486.1 261 100.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.5e-123 446.4 261 90.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-123 446.0 261 90.0
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-123 446.0 261 90.0
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.9e-123 446.0 261 90.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.3e-123 445.3 261 90.8
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.3e-123 445.3 261 90.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 4.3e-123 444.9 261 89.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.2e-122 443.4 261 88.9
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.2e-122 443.4 261 89.7
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.6e-122 443.0 261 89.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.1e-122 442.6 261 89.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.1e-122 442.6 261 89.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.1e-122 442.6 261 89.7
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.8e-122 442.2 261 88.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.7e-122 441.4 261 89.3
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 4.7e-122 441.4 261 88.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.2e-122 441.0 261 90.0
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.2e-122 441.0 261 89.3
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.1e-122 440.7 261 90.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 8.1e-122 440.7 261 90.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.4e-121 439.9 261 88.9
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.4e-121 439.1 261 88.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 4.0e-121 438.3 261 88.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.9e-121 437.2 261 88.9
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 8.9e-121 437.2 261 87.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.5e-120 436.4 261 86.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.0e-120 436.0 261 87.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.0e-120 436.0 261 87.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.6e-120 435.6 261 86.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.6e-120 435.6 261 87.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.4e-120 435.3 261 86.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.4e-120 435.3 261 87.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 7.6e-120 434.1 261 85.8
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 7.6e-120 434.1 261 85.4
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 9.9e-120 433.7 261 86.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 9.9e-120 433.7 261 86.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.2e-119 432.6 261 88.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.2e-119 432.6 261 86.2
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 6.4e-119 431.0 261 87.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 261 87.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.4e-119 430.6 261 87.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.9e-118 429.5 261 85.4
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.4e-118 429.1 261 87.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.4e-118 429.1 261 85.8
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.2e-118 428.7 261 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 5.4e-118 427.9 261 85.1
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 9.3e-118 427.2 261 86.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 9.3e-118 427.2 261 85.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 9.3e-118 427.2 261 86.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 261 86.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 261 86.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.6e-117 426.4 261 86.2
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.6e-117 426.4 261 85.1
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 86.6
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.1e-117 426.0 261 87.0
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 261 85.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 261 84.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.0e-117 424.5 261 84.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.8e-117 424.1 261 84.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.3e-116 423.3 261 83.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.7e-116 422.9 261 85.4
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.7e-116 422.9 262 85.9
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.7e-116 422.9 261 83.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.7e-116 422.9 261 84.3
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.3e-116 422.5 261 84.3
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 85.5
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 8.7e-116 420.6 261 83.9
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 8.7e-116 420.6 261 82.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 8.7e-116 420.6 261 84.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.1e-115 420.2 261 83.9
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-115 419.5 261 83.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.5e-115 419.1 261 85.8
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 5.6e-115 417.9 261 83.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.6e-115 417.2 261 82.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 84.0
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.1e-114 416.0 258 86.0
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 4.8e-114 414.8 261 82.0
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.2e-114 414.5 253 84.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 261 83.1
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 8.1e-114 414.1 261 83.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.4e-113 413.3 261 83.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.4e-113 412.5 261 82.8
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 2.4e-113 412.5 263 82.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.4e-113 412.5 261 82.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.0e-113 410.6 261 83.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.1e-110 403.7 261 80.1
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-110 403.7 263 80.6
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.4e-110 403.3 263 81.7
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.5
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.4e-110 401.4 246 85.8
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 246 85.8
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 9.3e-110 400.6 261 81.6
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.6e-109 399.8 261 82.4
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 6.0e-109 397.9 260 81.9
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 7.9e-109 397.5 261 80.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 79.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 6.6e-108 394.4 253 83.0
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 8.7e-108 394.0 261 79.7
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.5e-107 393.3 261 80.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 261 78.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 261 78.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 261 78.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 261 78.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 261 78.5
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 261 78.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 9.6e-107 390.6 261 78.5
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 9.6e-107 390.6 261 78.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 9.6e-107 390.6 261 78.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.3e-106 390.2 261 79.3
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-106 389.8 261 78.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.8e-106 389.0 261 78.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.8e-106 388.3 261 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.8e-106 388.3 261 78.2
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.2e-106 387.9 261 78.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.1e-105 387.1 261 78.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 78.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 79.4
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.8e-105 386.3 261 77.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 78.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 78.2
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 78.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 79.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 4.0e-105 385.2 261 77.8
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.4e-103 377.9 269 75.1
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.2e-102 375.6 261 78.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 7.1e-102 374.4 262 77.9
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.6e-101 373.2 262 77.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.3e-100 370.2 269 73.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.8e-100 369.8 262 77.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-100 369.8 265 78.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.9e-100 368.6 247 78.5
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.3e-99 365.5 261 77.0
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.4e-97 360.1 218 87.6
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-94 349.4 210 86.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 9.3e-94 347.4 248 72.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.5e-93 345.5 241 77.6
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.6e-93 345.1 262 68.3
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.8e-92 343.2 214 85.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.3e-92 342.8 219 79.9
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 3.0e-92 342.4 223 77.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.5e-91 339.3 261 72.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.8e-90 335.9 234 74.4
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.4e-89 332.8 262 66.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 4.5e-88 328.6 219 77.6
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.5e-80 302.0 250 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.3e-79 300.4 218 70.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.1e-77 293.1 232 63.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.1e-77 293.1 266 59.8
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.6e-77 292.4 246 68.3
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 5.7e-75 285.0 250 64.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.8e-74 282.0 203 73.9
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.5e-72 276.9 208 68.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.9e-72 275.0 261 64.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.8e-71 272.3 262 60.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.3e-68 263.1 269 55.8
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.6e-64 250.4 211 62.6
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.0e-60 237.7 235 62.1
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.3e-55 220.7 130 85.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 3.2e-54 216.1 226 53.1
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.7e-53 213.0 120 91.7
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.5e-51 207.2 203 56.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 6.3e-50 201.8 137 78.8
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-45 187.2 179 59.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.6e-43 179.9 117 79.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.5e-38 163.3 191 52.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.0e-36 156.0 141 64.5
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.0e-28 129.4 95 67.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 7.0e-25 118.6 69 89.9


User provided reference genes

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