Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.1e-250 869.4 420 100.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.6e-215 751.9 419 85.9
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.8e-208 729.2 419 83.5
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 5.3e-208 727.6 419 83.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.2e-206 722.2 419 81.1
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.6e-199 699.5 419 78.5
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 2.0e-199 699.1 419 78.3
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.0e-199 699.1 419 79.7
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 5.9e-199 697.6 419 80.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 5.0e-198 694.5 419 79.7
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 8.5e-198 693.7 420 78.6
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.5e-197 693.0 419 78.0
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.2e-197 691.8 419 78.5
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 9.4e-197 690.3 419 78.3
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 8.0e-196 687.2 419 77.8
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.4e-195 686.4 419 77.3
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.5e-194 680.6 419 76.4
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 7.5e-194 680.6 419 77.6
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.7e-193 679.5 419 78.0
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.7e-193 679.5 419 76.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 8.3e-193 677.2 419 77.6
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 3.1e-192 675.2 419 77.8
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 4.1e-192 674.9 420 77.6
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.0e-191 672.5 419 75.9
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.7e-191 672.2 419 75.4
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.7e-190 669.5 419 77.1
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.5e-189 666.4 419 77.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.5e-189 666.4 419 75.9
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.2e-189 664.8 419 76.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.5e-189 664.5 419 76.8
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.2e-188 663.3 419 77.1
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.6e-188 661.8 419 75.4
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.1e-188 661.0 419 77.1
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.8e-187 659.4 420 77.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.8e-187 659.4 419 76.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.8e-187 659.4 419 75.7
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.8e-187 659.4 419 74.7
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.3e-187 659.1 420 76.4
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-186 656.8 419 74.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 9.8e-186 653.7 419 75.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.3e-185 653.3 419 75.2
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.7e-185 652.9 403 77.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.8e-185 652.1 419 75.2
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 8.3e-185 650.6 419 73.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.4e-184 647.9 419 73.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.4e-184 647.9 419 74.2
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 7.0e-184 647.5 419 73.5
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.6e-183 646.4 419 74.2
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.3e-182 643.3 415 73.5
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 8.6e-182 640.6 419 73.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 5.6e-181 637.9 419 72.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.8e-180 635.6 419 72.3
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.6e-180 635.2 419 72.6
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 4.7e-180 634.8 419 73.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 6.1e-180 634.4 420 74.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.1e-180 634.4 419 73.3
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.9e-179 630.6 419 73.3
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.2e-178 630.2 418 72.7
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.2e-178 630.2 419 72.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.5e-178 629.8 420 73.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 7.5e-178 627.5 424 71.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 7.5e-178 627.5 419 72.1
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.2e-177 625.9 419 73.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 2.2e-177 625.9 419 71.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 4.1e-176 621.7 419 70.9
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.6e-175 619.8 419 71.1
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.5e-175 618.6 419 71.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 71.9
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 6.6e-174 614.4 422 73.5
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 8.6e-174 614.0 419 70.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 4.3e-173 611.7 419 71.1
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 9.5e-173 610.5 407 71.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.0e-171 605.1 419 69.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 2.0e-170 602.8 419 69.0
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.4e-170 601.7 419 70.2
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.8e-170 601.3 424 68.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 7.5e-170 600.9 424 70.3
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.5e-170 600.9 420 69.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 9.8e-170 600.5 422 69.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.7e-169 599.7 409 70.7
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.9e-169 599.0 420 69.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.7e-169 598.6 424 68.4
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.5e-167 592.0 419 67.5
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 6.0e-167 591.3 421 67.9
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.0e-166 590.5 423 70.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.0e-166 590.5 419 69.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.9e-166 588.6 419 69.2
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.9e-165 586.3 419 68.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 8.1e-164 580.9 419 68.3
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-163 580.5 419 67.5
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.4e-163 580.1 419 67.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 68.3
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 8.9e-163 577.4 419 67.3
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 7.5e-162 574.3 419 66.8
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 9.9e-162 573.9 420 67.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.1e-160 570.5 419 66.8
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.9e-160 569.7 419 66.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.4e-160 569.3 419 66.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 9.2e-160 567.4 419 66.3
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 9.2e-160 567.4 419 66.3
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.0e-159 564.7 419 65.9
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.5e-157 560.1 419 64.4
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 4.3e-157 558.5 419 65.4
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.2e-153 546.2 419 61.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 6.4e-153 544.7 377 68.4
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.2e-152 542.3 420 65.5
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.7e-151 539.3 420 65.2
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.7e-151 539.3 420 65.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.0e-150 537.3 421 64.8
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 3.0e-150 535.8 419 61.1
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.1e-149 533.9 421 61.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.4e-139 499.6 424 57.8
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 7.4e-133 478.0 356 68.0
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 9.6e-133 477.6 420 55.0
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 8.7e-126 454.5 405 53.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 8.7e-126 454.5 424 53.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 7.1e-120 434.9 424 52.1
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 4.8e-116 422.2 281 71.5
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.1e-115 419.5 251 80.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 9.0e-115 417.9 398 54.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.7e-113 413.7 417 48.7
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.1e-111 405.2 421 49.2
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.2e-92 343.6 418 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.8e-92 343.2 375 45.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.8e-91 340.5 302 59.3
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.0e-89 332.4 344 49.7
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.6e-87 327.4 248 62.1
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 8.6e-73 278.5 302 45.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.9e-66 255.8 265 52.5
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 2.0e-61 240.7 134 81.3
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.3e-49 200.7 131 75.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.1e-46 190.3 154 61.0
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-38 164.5 99 77.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-34 151.8 91 78.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-29 132.9 74 81.1
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-28 131.7 71 83.1
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-27 126.7 71 81.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 80.3
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 80.3
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.3e-24 117.1 104 55.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.4e-22 111.7 104 54.8
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 6.9e-14 82.8 423 24.3
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 3.9e-09 67.0 306 24.2
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 6.7e-09 66.2 307 24.4
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.5e-08 65.1 191 28.8
Psat3g075160 Pisum sativum HOM05D000312 ORTHO05D000221 1.5e-08 65.1 209 23.4
Ah.15g095780 Amaranthus hybridus HOM05D003488 ORTHO05D004214 1.9e-08 64.7 310 24.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 240 26.2
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 240 26.2
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 4.8e-07 60.1 318 23.3
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 4.8e-07 60.1 240 25.8
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 6.2e-07 59.7 236 22.5
FvH4_5g01320 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 58.5 126 27.8
FAN18G3400 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 58.5 126 27.8
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 3.1e-06 57.4 222 24.3
Actinidia37828 Actinidia chinensis HOM05D000312 ORTHO05D000493 5.3e-06 56.6 251 23.1
HPP92_016716 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.3e-06 56.6 85 42.4
FAN08G1564 Fragaria x ananassa HOM05D000312 ORTHO05D000221 9.0e-06 55.8 79 30.4


User provided reference genes

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