Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 0.0e+00 1454.9 861 100.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 8.9e-234 814.3 899 58.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.0e-226 788.9 892 56.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 7.8e-222 774.6 912 55.7
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.1e-180 637.9 843 50.2
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.4e-175 620.9 857 49.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 4.1e-170 602.8 875 47.3
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.2e-169 601.3 835 48.3
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.7e-169 598.6 835 48.1
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.9e-168 596.7 835 47.9
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.9e-167 594.0 869 48.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 5.5e-167 592.4 820 50.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 5.1e-165 585.9 810 48.9
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 6.9e-162 575.5 892 49.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.3e-157 560.5 892 46.1
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.3e-156 556.6 875 45.9
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.0e-154 548.9 792 42.7
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.5e-153 547.7 859 43.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 7.7e-153 545.4 761 47.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.7e-153 545.4 878 41.8
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.9e-151 540.8 854 44.5
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.6e-150 537.7 841 45.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.7e-150 537.0 763 47.1
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 6.1e-150 535.8 869 40.9
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 6.1e-150 535.8 862 49.9
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.3e-149 533.9 876 44.7
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.3e-149 533.9 883 43.3
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.0e-149 533.5 801 41.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 3.0e-149 533.5 891 42.6
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-147 528.1 839 45.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.2e-147 527.3 840 44.3
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.8e-147 526.2 831 46.3
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.1e-146 521.9 841 44.6
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 9.1e-146 521.9 795 49.7
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-145 521.2 776 45.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.2e-143 513.1 904 42.3
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.2e-143 513.1 889 42.2
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.5e-143 512.7 883 42.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.2e-142 511.5 708 47.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 8.0e-142 508.8 838 45.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-141 508.4 829 45.7
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 5.2e-141 506.1 864 42.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 5.2e-141 506.1 865 41.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-140 505.0 890 42.4
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.0e-140 504.2 876 45.5
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.8e-139 499.6 833 41.2
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.1e-138 498.4 872 46.8
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.3e-136 491.5 755 40.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.2e-136 490.7 852 40.6
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.0e-133 481.9 877 43.9
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.4e-132 476.9 763 39.2
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 4.9e-131 473.0 849 42.0
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 5.4e-130 469.5 768 46.6
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.8e-125 454.5 835 40.0
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.0e-125 453.8 820 45.1
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 8.3e-123 445.7 798 43.0
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.4e-122 444.9 890 39.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.1e-122 443.4 912 36.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.6e-121 439.9 755 38.4
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 5.0e-120 436.4 879 37.9
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 5.6e-119 433.0 896 38.5
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.2e-118 431.8 757 37.8
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.2e-118 429.5 894 38.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 2.0e-116 424.5 755 39.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 4.4e-116 423.3 953 42.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 9.8e-116 422.2 792 44.3
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.3e-115 421.8 746 38.6
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.4e-115 419.5 757 37.3
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.2e-114 417.2 854 36.7
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 7.8e-113 412.5 769 45.6
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 8.6e-112 409.1 763 35.4
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.8e-109 399.4 678 37.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.6e-108 397.5 761 40.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 9.8e-108 395.6 750 40.0
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.7e-107 394.8 779 39.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.9e-107 394.0 838 35.8
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.9e-107 393.3 762 38.6
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.9e-107 393.3 750 40.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.1e-106 392.1 760 40.0
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.1e-106 392.1 768 36.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.7e-105 387.5 875 37.5
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.9e-104 383.6 761 36.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 8.6e-104 382.5 804 35.0
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.1e-103 382.1 760 36.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.3e-103 380.6 882 40.0
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.2e-102 378.6 840 33.6
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.6e-102 377.1 774 38.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.3e-101 374.4 764 36.1
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.6e-100 370.9 804 33.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 7.6e-100 369.4 876 35.7
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 9.9e-100 369.0 927 35.3
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.9e-99 366.7 743 39.6
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.1e-96 356.7 788 34.5
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 8.6e-96 355.9 774 36.0
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 4.0e-93 347.1 781 35.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.6e-92 344.4 769 35.8
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.6e-92 344.4 875 34.2
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.4e-92 344.0 796 33.4
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 9.9e-92 342.4 741 34.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 8.4e-91 339.3 706 40.4
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 9.3e-90 335.9 867 33.6
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.1e-88 330.1 801 36.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 9.0e-85 319.3 864 35.5
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.6e-84 317.8 825 31.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.4e-84 317.0 304 55.6
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.4e-84 317.0 990 34.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.9e-82 311.6 772 32.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 4.2e-82 310.5 893 32.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.2e-81 308.9 883 32.5
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.7e-80 305.1 471 49.3
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 4.8e-78 297.0 815 35.2
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 4.8e-78 297.0 717 35.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.5e-76 290.4 275 53.1
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.4e-71 273.1 271 54.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 2.3e-64 251.5 322 54.3
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 3.3e-63 247.7 624 36.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.8e-62 243.8 758 27.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.8e-62 243.8 845 30.8
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 5.7e-55 220.3 820 27.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.2e-54 218.4 275 49.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.1e-45 188.0 174 51.1
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-40 172.9 149 60.4
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.9e-40 171.0 748 25.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 4.1e-37 161.0 448 33.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.2e-36 159.5 326 38.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.9e-35 154.8 144 54.9
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 7.2e-34 150.2 173 47.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 6.3e-30 137.1 152 50.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.6e-25 121.3 228 34.6
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.7e-22 112.5 263 33.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.1e-21 109.8 263 33.8
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 5.4e-21 107.5 213 34.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 7.7e-20 103.6 787 25.0
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.0e-19 100.9 199 35.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 8.0e-17 93.6 76 65.8
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.4e-16 92.8 130 40.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 7.5e-15 87.0 170 34.1
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 1.0e-08 66.6 63 55.6
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.4e-08 66.2 63 55.6
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 3.0e-08 65.1 63 49.2
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 4.4e-07 61.2 59 54.2


User provided reference genes

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