Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1720.7 874 100.0
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1441.4 870 83.3
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1422.5 867 82.5
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1373.2 834 83.1
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1307.7 866 75.6
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1292.7 869 75.8
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1286.2 866 75.4
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1282.3 866 74.4
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1281.9 866 74.2
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1275.4 868 74.3
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1273.5 868 74.1
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1269.2 868 74.3
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1269.2 868 74.5
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1265.0 867 75.2
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1265.0 868 74.3
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1258.4 868 73.3
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1257.7 866 75.5
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1256.1 869 74.1
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1252.7 866 74.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1247.3 866 74.6
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1246.5 866 73.0
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1244.2 867 73.1
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1243.8 865 73.3
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1240.3 870 72.6
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1238.8 869 73.6
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1238.8 866 73.0
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1235.3 867 72.9
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1233.0 866 74.0
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1231.9 867 72.5
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1227.2 867 72.3
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1227.2 865 72.6
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1221.8 868 72.8
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1221.5 874 71.3
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1218.8 866 71.9
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1218.8 867 71.4
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1216.4 867 71.3
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1206.4 867 72.1
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1199.9 883 70.8
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1197.2 825 72.2
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1192.9 867 71.2
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1182.5 868 69.8
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1181.0 869 70.3
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1178.7 872 69.7
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1173.3 869 69.6
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1165.6 869 69.9
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1157.5 867 69.3
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1156.7 866 67.6
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1153.3 866 67.4
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1143.6 865 67.6
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1143.6 867 68.3
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1139.8 850 68.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1137.1 875 67.3
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1135.6 864 67.2
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 0.0e+00 1134.0 867 67.8
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1132.5 863 67.3
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1130.9 864 67.1
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 0.0e+00 1129.8 877 67.0
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1124.8 863 66.7
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1119.4 857 66.7
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 0.0e+00 1097.8 871 65.3
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1093.2 850 66.4
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 0.0e+00 1091.6 874 65.1
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 0.0e+00 1082.4 873 65.2
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 0.0e+00 1075.5 875 64.0
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 6.0e-312 1073.9 877 62.9
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 6.0e-312 1073.9 871 64.3
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 1.9e-308 1062.4 872 64.2
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.2e-308 1061.6 872 64.6
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.2e-307 1059.7 871 64.3
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 4.7e-307 1057.7 872 64.2
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 8.0e-307 1057.0 871 63.1
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 6.8e-306 1053.9 873 63.5
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.5e-305 1052.7 920 61.2
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.5e-305 1052.7 755 71.5
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 4.4e-305 1051.2 866 63.0
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.4e-303 1046.2 809 68.5
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 5.4e-303 1044.3 873 63.0
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 9.1e-303 1043.5 802 66.7
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 1.6e-302 1042.7 755 72.1
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.0e-302 1042.3 856 63.1
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.2e-301 1038.9 871 63.0
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 2.7e-299 1031.9 874 62.5
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 3.0e-298 1028.5 809 65.8
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 5.7e-297 1024.2 855 62.2
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 6.6e-285 984.2 832 62.7
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.8e-282 976.1 851 60.8
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 4.1e-279 964.9 810 62.2
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.4e-274 949.9 870 58.3
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 2.8e-267 925.6 865 55.7
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 7.6e-265 917.5 867 56.9
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 2.3e-261 906.0 856 57.1
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 7.3e-260 901.0 650 71.5
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.1e-258 897.1 811 59.4
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 6.6e-253 877.9 874 52.9
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 3.3e-252 875.5 870 53.2
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 2.6e-249 865.9 692 66.6
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 2.6e-241 839.3 861 53.7
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 2.4e-210 736.5 754 51.5
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.8e-194 683.7 522 67.8
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.2e-182 644.4 735 49.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 2.0e-156 557.4 423 66.2
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.1e-146 525.0 835 38.6
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 7.6e-140 502.3 875 36.7
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 9.3e-138 495.4 858 39.3
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 3.3e-119 433.7 322 68.6
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 2.7e-105 387.5 998 31.5
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 4.0e-64 250.8 189 67.7
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.4e-30 137.1 92 72.8
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 1.9e-29 135.6 100 71.0
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 7.6e-23 113.6 65 78.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 6.0e-20 104.0 63 79.4
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.7e-19 102.4 921 21.6
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 8.7e-19 100.1 733 22.8
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 9.0e-16 90.1 65 64.6
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.2e-15 89.7 57 73.7
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 3.4e-15 88.2 66 65.2
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.4e-13 82.8 104 48.1
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.9e-13 82.4 57 75.4
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 9.3e-13 80.1 57 70.2
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.8e-09 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.8e-08 65.9 42 69.0
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 4.0e-08 64.7 101 46.5
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 2.6e-07 62.0 590 22.0
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 1.0e-06 60.1 110 35.5
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 8.4e-06 57.0 55 52.7


User provided reference genes

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