Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p041624 Quercus lobata HOM05D000621 ORTHO05D000421 4.6e-32 140.6 69 100.0
QL08p041670 Quercus lobata HOM05D000621 ORTHO05D000421 3.9e-31 137.5 69 98.6
QL08p041642 Quercus lobata HOM05D000621 ORTHO05D000421 4.9e-26 120.6 61 98.4
QL08p041687 Quercus lobata HOM05D000621 ORTHO05D000421 4.9e-26 120.6 61 98.4
QL08p041697 Quercus lobata HOM05D000621 ORTHO05D000421 4.4e-19 97.4 60 76.7
QL02p093988 Quercus lobata HOM05D000621 ORTHO05D000421 1.7e-18 95.5 57 84.2
Haze_14728 Corylus avellana HOM05D000621 ORTHO05D000421 7.8e-16 86.7 58 74.1
QL09p005700 Quercus lobata HOM05D000621 ORTHO05D000421 3.9e-15 84.3 54 77.8
Cfa007381 Carpinus fangiana HOM05D000621 ORTHO05D000421 5.1e-15 84.0 56 75.0
Thecc.05G041100 Theobroma cacao HOM05D000621 ORTHO05D000421 1.6e-13 79.0 61 59.0
Haze_13372 Corylus avellana HOM05D000621 ORTHO05D000421 8.1e-13 76.6 55 63.6
Gohir.A13G013800 Gossypium hirsutum HOM05D000621 ORTHO05D000421 8.1e-13 76.6 62 56.5
Gohir.D13G015000 Gossypium hirsutum HOM05D000621 ORTHO05D000421 8.1e-13 76.6 62 56.5
Gorai.013G016500 Gossypium raimondii HOM05D000621 ORTHO05D000421 8.1e-13 76.6 62 56.5
MD04G1194400 Malus domestica HOM05D000621 ORTHO05D000421 1.4e-12 75.9 56 64.3
Gohir.D13G014900 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.4e-12 75.1 62 56.5
Gorai.013G016200 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.4e-12 75.1 62 56.5
Carub.0001s0570 Capsella rubella HOM05D000621 ORTHO05D000421 3.1e-12 74.7 61 57.4
Gohir.A13G013700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 3.1e-12 74.7 62 56.5
Duzib128G0876 Durio zibethinus HOM05D000621 ORTHO05D000421 4.0e-12 74.3 62 59.7
COL.COLO4_14820 Corchorus olitorius HOM05D000621 ORTHO05D000421 1.2e-11 72.8 61 55.7
AL1G16350 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 2.0e-11 72.0 58 58.6
Cfa023334 Carpinus fangiana HOM05D000621 ORTHO05D000421 2.0e-11 72.0 55 63.6
Manes.09G128200 Manihot esculenta HOM05D000621 ORTHO05D000421 3.4e-11 71.2 56 62.5
THA.LOC104800847 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 4.5e-11 70.9 57 57.9
CARHR005900 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.3e-10 69.3 58 56.9
Potri.009G151200 Populus trichocarpa HOM05D000621 ORTHO05D000421 1.7e-10 68.9 55 61.8
Aa31LG1G7340 Aethionema arabicum HOM05D000621 ORTHO05D000421 2.9e-10 68.2 54 55.6
Gohir.D13G014750 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.9e-10 68.2 62 48.4
COL.COLO4_15144 Corchorus olitorius HOM05D000621 ORTHO05D000421 3.8e-10 67.8 55 58.2
Gorai.013G016000 Gossypium raimondii HOM05D000621 ORTHO05D000421 3.8e-10 67.8 62 48.4
AT1G06340 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 6.4e-10 67.0 58 51.7
Sp1g05130 Schrenkiella parvula HOM05D000621 ORTHO05D000421 6.4e-10 67.0 58 56.9
BcaC07g42070 Brassica carinata HOM05D000621 ORTHO05D000421 8.4e-10 66.6 58 56.9
Dinv08798 Davidia involucrata HOM05D000621 ORTHO05D000421 8.4e-10 66.6 56 60.7
C08p51290 Brassica napus HOM05D000262 ORTHO05D000300 1.1e-09 66.2 58 56.9
BolC8t52655H Brassica oleracea HOM05D000262 ORTHO05D000300 1.1e-09 66.2 58 56.9
Thhalv10009453m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 1.1e-09 66.2 58 53.4
FAN05G5074 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.1e-09 66.2 56 60.7
FAN05G5249 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.1e-09 66.2 56 60.7
TWI63G0878 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.1e-09 66.2 55 58.2
BraA09t42037Z Brassica rapa HOM05D000262 ORTHO05D000300 1.4e-09 65.9 58 55.2
FvH4_6g05270 Fragaria vesca HOM05D000621 ORTHO05D000421 1.4e-09 65.9 56 60.7
Peaxi162Scf00469g00022 Petunia axillaris HOM05D000621 ORTHO05D000421 1.4e-09 65.9 57 57.9
A09p67030 Brassica napus HOM05D000262 ORTHO05D000300 1.9e-09 65.5 58 56.9
RcHm_v2.0_Chr3g0454011 Rosa chinensis HOM05D000621 ORTHO05D000421 1.9e-09 65.5 56 58.9
Ca_18882_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 2.4e-09 65.1 55 61.8
Prupe.6G314400 Prunus persica HOM05D000621 ORTHO05D000421 2.4e-09 65.1 56 51.8
Solyc03g120030.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 2.4e-09 65.1 58 53.4
Thecc.05G041200 Theobroma cacao HOM05D000621 ORTHO05D000421 2.4e-09 65.1 61 52.5
Psat7g165520 Pisum sativum HOM05D000621 ORTHO05D000421 4.2e-09 64.3 52 59.6
Psat7g165560 Pisum sativum HOM05D000621 ORTHO05D000421 4.2e-09 64.3 52 59.6
Prupe.6G314500 Prunus persica HOM05D000621 ORTHO05D000421 4.2e-09 64.3 55 60.0
Ca_02028_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 5.4e-09 63.9 52 59.6
Solyc06g072450.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 5.4e-09 63.9 55 52.7
Sopen06g028510 Solanum pennellii HOM05D000621 ORTHO05D000421 5.4e-09 63.9 55 52.7
PGSC0003DMG400005608 Solanum tuberosum HOM05D000621 ORTHO05D000421 5.4e-09 63.9 58 51.7
PGSC0003DMG400027055 Solanum tuberosum HOM05D000621 ORTHO05D000421 5.4e-09 63.9 55 52.7
PGSC0003DMG400044084 Solanum tuberosum HOM05D000621 ORTHO05D000421 5.4e-09 63.9 55 52.7
CSS0007912 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.2e-08 62.8 56 57.1
FAN14G5271 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.2e-08 62.8 56 58.9
Lalb_Chr03g0029901 Lupinus albus HOM05D000621 ORTHO05D000421 1.6e-08 62.4 53 56.6
Lalb_Chr01g0005991 Lupinus albus HOM05D000621 ORTHO05D000421 2.1e-08 62.0 53 56.6
Peaxi162Scf00227g00082 Petunia axillaris HOM05D000621 ORTHO05D000421 2.1e-08 62.0 56 53.6
RcHm_v2.0_Chr6g0290521 Rosa chinensis HOM05D000621 ORTHO05D000421 2.1e-08 62.0 54 57.4
PGSC0003DMG400027057 Solanum tuberosum HOM05D000621 ORTHO05D000421 2.7e-08 61.6 55 50.9
CARHR005960 Cardamine hirsuta HOM05D000621 ORTHO05D000421 3.5e-08 61.2 59 52.5
FvH4_6g14470 Fragaria vesca HOM05D000621 ORTHO05D000421 3.5e-08 61.2 55 56.4
Sopen03g038910 Solanum pennellii HOM05D000621 ORTHO05D000421 3.5e-08 61.2 58 51.7
Sopen06g028520 Solanum pennellii HOM05D000621 ORTHO05D000421 3.5e-08 61.2 55 50.9
FAN02G1176 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.6e-08 60.8 55 54.5
FAN05G3124 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.6e-08 60.8 55 54.5
FAN09G0043 Fragaria x ananassa HOM05D000621 ORTHO05D000421 4.6e-08 60.8 55 54.5
CANSAT11G1282 Cannabis sativa HOM05D000621 ORTHO05D000421 7.9e-08 60.1 56 51.8
FAN14G2616 Fragaria x ananassa HOM05D000621 ORTHO05D000421 7.9e-08 60.1 55 56.4
Sopen06g022050 Solanum pennellii HOM05D000621 ORTHO05D000421 7.9e-08 60.1 58 51.7
Medtr4g079830 Medicago truncatula HOM05D000621 ORTHO05D000421 1.0e-07 59.7 52 55.8
Nitab4.5_0018880g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.3e-07 59.3 54 51.9
Psat7g252320 Pisum sativum HOM05D000621 ORTHO05D000421 1.3e-07 59.3 51 54.9
Sopen06g028480 Solanum pennellii HOM05D000621 ORTHO05D000421 1.3e-07 59.3 55 52.7
Sopen06g028820 Solanum pennellii HOM05D000621 ORTHO05D000421 1.3e-07 59.3 55 52.7
TPR.G22463 Trifolium pratense HOM05D000621 ORTHO05D000421 1.3e-07 59.3 50 58.0
VMungo1127G0414 Vigna mungo HOM05D000621 ORTHO05D000421 1.3e-07 59.3 52 57.7
Glyma.12G127600 Glycine max HOM05D000621 ORTHO05D000421 1.8e-07 58.9 51 51.0
Medtr4g079980 Medicago truncatula HOM05D000621 ORTHO05D000421 1.8e-07 58.9 50 56.0
CAN.G438.86 Capsicum annuum HOM05D000621 ORTHO05D000421 2.3e-07 58.5 58 51.7
CAN.G65.66 Capsicum annuum HOM05D000621 ORTHO05D000421 2.3e-07 58.5 55 49.1
Nitab4.5_0007872g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 2.3e-07 58.5 54 50.0
CAN.G65.67 Capsicum annuum HOM05D000621 ORTHO05D000421 3.0e-07 58.2 55 49.1
Phvul.011G130600 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.0e-07 58.2 50 58.0
Phvul.011G130700 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.0e-07 58.2 50 58.0
Sopen06g028490 Solanum pennellii HOM05D000621 ORTHO05D000421 3.0e-07 58.2 55 52.7
CAN.G194.21 Capsicum annuum HOM05D000621 ORTHO05D000421 3.9e-07 57.8 55 49.1
CAN.G65.95 Capsicum annuum HOM05D000621 ORTHO05D000421 3.9e-07 57.8 55 49.1
Cpa.g.c45528 Carica papaya HOM05D000621 ORTHO05D000421 3.9e-07 57.8 54 53.7
Medtr5g089140 Medicago truncatula HOM05D000621 ORTHO05D000421 3.9e-07 57.8 50 54.0
Medtr5g089250 Medicago truncatula HOM05D000621 ORTHO05D000421 3.9e-07 57.8 50 54.0
Nn1g04409 Nelumbo nucifera HOM05D000621 ORTHO05D000421 3.9e-07 57.8 55 52.7
Nitab4.5_0000537g0090 Nicotiana tabacum HOM05D000621 ORTHO05D000421 5.1e-07 57.4 54 53.7
Oeu020921.1 Olea europaea HOM05D000621 ORTHO05D000421 6.7e-07 57.0 53 56.6
SGA_v2.0_scaffold9G04815 Striga asiatica HOM05D000621 ORTHO05D000421 6.7e-07 57.0 55 54.5
Aa31LG1G7360 Aethionema arabicum HOM05D000621 ORTHO05D000421 8.7e-07 56.6 58 46.6
Psat0s3389g0040 Pisum sativum HOM05D000621 ORTHO05D000421 8.7e-07 56.6 50 60.0
CAN.G456.2 Capsicum annuum HOM05D000621 ORTHO05D000421 1.1e-06 56.2 56 53.6
PGSC0003DMG400027056 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.1e-06 56.2 55 49.1
TPR.G5408 Trifolium pratense HOM05D000621 ORTHO05D000421 1.1e-06 56.2 50 56.0
Aa31LG1G7370 Aethionema arabicum HOM05D000621 ORTHO05D000421 1.5e-06 55.8 57 49.1
Aqoxy6G00212 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.5e-06 55.8 55 54.5
Cc05_g11190 Coffea canephora HOM05D000621 ORTHO05D000421 1.5e-06 55.8 54 46.3
Phvul.002G204200 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 1.5e-06 55.8 48 58.3
Eucgr.J01526 Eucalyptus grandis HOM05D000621 ORTHO05D000421 1.9e-06 55.5 57 45.6
FAN09G0673 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.9e-06 55.5 51 54.9
Medtr5g089220 Medicago truncatula HOM05D000621 ORTHO05D000421 1.9e-06 55.5 50 52.0
Ca_18110_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 2.5e-06 55.1 50 48.0
Ca_18874_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 2.5e-06 55.1 50 48.0
Ca_28221_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 2.5e-06 55.1 50 48.0
DCAR_030426 Daucus carota HOM05D000621 ORTHO05D000421 2.5e-06 55.1 55 52.7
Glyma.06G277700 Glycine max HOM05D000621 ORTHO05D000421 2.5e-06 55.1 51 47.1
Lsat_1_v5_gn_8_139620 Lactuca sativa HOM05D000621 ORTHO05D000421 2.5e-06 55.1 56 46.4
RcHm_v2.0_Chr7g0235761 Rosa chinensis HOM05D000621 ORTHO05D000421 2.5e-06 55.1 55 49.1
SalBow7G2455 Salvia bowleyana HOM05D000621 ORTHO05D000421 2.5e-06 55.1 55 52.7
Solyc07g055040.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 2.5e-06 55.1 54 53.7
Sopen07g027170 Solanum pennellii HOM05D000621 ORTHO05D000421 2.5e-06 55.1 54 53.7
ECA238G0422 Erigeron canadensis HOM05D000621 ORTHO05D000421 3.3e-06 54.7 56 50.0
Sopen06g028500 Solanum pennellii HOM05D000621 ORTHO05D000421 3.3e-06 54.7 53 49.1
Nitab4.5_0010988g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 4.3e-06 54.3 54 55.6
CAN.G456.16 Capsicum annuum HOM05D000621 ORTHO05D000421 5.6e-06 53.9 55 54.5
Cpa.g.sc693.1 Carica papaya HOM05D000621 ORTHO05D000421 5.6e-06 53.9 56 48.2
FAN20G3012 Fragaria x ananassa HOM05D000621 ORTHO05D000421 5.6e-06 53.9 54 48.1
PGSC0003DMG400026947 Solanum tuberosum HOM05D000621 ORTHO05D000421 5.6e-06 53.9 54 48.1
FAN15G1745 Fragaria x ananassa HOM05D000621 ORTHO05D000421 7.4e-06 53.5 54 48.1
PGSC0003DMG402020444 Solanum tuberosum HOM05D000621 ORTHO05D000421 7.4e-06 53.5 54 53.7
TWI39G0827 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 7.4e-06 53.5 50 58.0
FAN24G1261 Fragaria x ananassa HOM05D000621 ORTHO05D000421 9.6e-06 53.1 54 48.1
Nitab4.5_0012213g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 9.6e-06 53.1 59 45.8
RcHm_v2.0_Chr6g0290541 Rosa chinensis HOM05D000621 ORTHO05D000421 9.6e-06 53.1 56 48.2


User provided reference genes

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