Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p041339 Quercus lobata HOM05D002439 ORTHO05D002650 1.9e-48 195.7 110 100.0
Haze_13343 Corylus avellana HOM05D002439 ORTHO05D002650 4.3e-24 114.8 105 57.1
Sabra13G0100200 Salix brachista HOM05D002439 ORTHO05D002650 8.9e-22 107.1 106 53.8
Sabra19G0100700 Salix brachista HOM05D002439 ORTHO05D002650 3.4e-21 105.1 106 51.9
Sabra19G0104100 Salix brachista HOM05D002439 ORTHO05D002650 7.6e-21 104.0 106 50.9
arahy.Tifrunner.gnm1.ann1.DQDZ84 Arachis hypogaea HOM05D002439 ORTHO05D002650 7.1e-19 97.4 105 51.4
SHI00883 Sapria himalayana HOM05D002439 ORTHO05D002650 9.9e-13 77.0 105 43.8
Zm00001eb338460 Zea mays HOM05D002439 ORTHO05D002650 8.4e-12 73.9 104 38.5
Dinv15465 Davidia involucrata HOM05D002439 ORTHO05D002650 1.4e-11 73.2 37 89.2
TWI14G0466 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 2.4e-11 72.4 37 89.2
CiPaw.03G185900 Carya illinoinensis HOM05D002439 ORTHO05D002650 4.2e-11 71.6 39 82.1
Lj1E686T0 Lonicera japonica HOM05D002439 ORTHO05D002650 4.2e-11 71.6 39 82.1
Lj1E689T0 Lonicera japonica HOM05D002439 ORTHO05D002650 4.2e-11 71.6 39 82.1
HanXRQChr16g0526231 Helianthus annuus HOM05D002439 ORTHO05D002650 5.4e-11 71.2 39 82.1
TWI59G0606 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 5.4e-11 71.2 39 82.1
RcHm_v2.0_Chr2g0129051 Rosa chinensis HOM05D002439 ORTHO05D002650 7.1e-11 70.9 39 79.5
SalBow7G0011 Salvia bowleyana HOM05D002439 ORTHO05D002650 7.1e-11 70.9 39 82.1
CSS0038402 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 9.3e-11 70.5 39 82.1
ClCG09G011370 Citrullus lanatus HOM05D002439 ORTHO05D002650 9.3e-11 70.5 37 83.8
Lsat_1_v5_gn_4_27781 Lactuca sativa HOM05D002439 ORTHO05D002650 9.3e-11 70.5 37 83.8
MBI07_g17047_MAGBIO Magnolia biondii HOM05D002439 ORTHO05D002650 9.3e-11 70.5 106 42.5
Potri.019G090500 Populus trichocarpa HOM05D002439 ORTHO05D002650 9.3e-11 70.5 39 84.6
CANSAT64G1999 Cannabis sativa HOM05D002439 ORTHO05D002650 1.2e-10 70.1 37 83.8
CsaV3_6G037590 Cucumis sativus L. HOM05D002439 ORTHO05D002650 1.2e-10 70.1 37 83.8
Dinv03919 Davidia involucrata HOM05D002439 ORTHO05D002650 1.2e-10 70.1 37 81.1
Lalb_Chr24g0400051 Lupinus albus HOM05D002439 ORTHO05D002650 1.2e-10 70.1 39 82.1
CSS0008217 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 2.1e-10 69.3 37 78.4
Ciclev10017362m.g Citrus clementina HOM05D002439 ORTHO05D002650 2.1e-10 69.3 39 76.9
MELO3C014353.2 Cucumis melo HOM05D002439 ORTHO05D002650 2.1e-10 69.3 37 81.1
RcHm_v2.0_Chr2g0128431 Rosa chinensis HOM05D002439 ORTHO05D002650 2.1e-10 69.3 39 79.5
FvH4_6g27090 Fragaria vesca HOM05D002439 ORTHO05D002650 2.7e-10 68.9 39 76.9
FAN05G1655 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.7e-10 68.9 39 76.9
FAN09G4017 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.7e-10 68.9 39 76.9
FAN14G1604 Fragaria x ananassa HOM05D002439 ORTHO05D002650 2.7e-10 68.9 39 76.9
Lj3g0028058 Lotus japonicus HOM05D002439 ORTHO05D002650 2.7e-10 68.9 39 79.5
Lalb_Chr20g0121301 Lupinus albus HOM05D002439 ORTHO05D002650 2.7e-10 68.9 38 84.2
EL10Ac9g20879 Beta vulgaris HOM05D002439 ORTHO05D002650 4.6e-10 68.2 37 78.4
Phvul.011G135700 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 4.6e-10 68.2 39 76.9
Sed0028107 Sechium edule HOM05D002439 ORTHO05D002650 4.6e-10 68.2 37 78.4
HanXRQChr16g0526291 Helianthus annuus HOM05D002439 ORTHO05D002650 7.8e-10 67.4 39 76.9
Prupe.3G124200 Prunus persica HOM05D002439 ORTHO05D002650 7.8e-10 67.4 39 76.9
Prupe.8G118600 Prunus persica HOM05D002439 ORTHO05D002650 7.8e-10 67.4 39 76.9
Actinidia10978 Actinidia chinensis HOM05D002439 ORTHO05D002650 1.0e-09 67.0 39 74.4
MD09G1240200 Malus domestica HOM05D002439 ORTHO05D002650 1.0e-09 67.0 39 76.9
MD17G1233200 Malus domestica HOM05D002439 ORTHO05D002650 1.0e-09 67.0 39 76.9
Phvul.005G096500 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 1.0e-09 67.0 39 74.4
Glyma.12G122200 Glycine max HOM05D002439 ORTHO05D002650 1.3e-09 66.6 39 74.4
Nitab4.5_0012054g0010 Nicotiana tabacum HOM05D002439 ORTHO05D002650 1.3e-09 66.6 41 70.7
Psat5g275560 Pisum sativum HOM05D002439 ORTHO05D002650 1.3e-09 66.6 37 78.4
TPR.G11482 Trifolium pratense HOM05D002439 ORTHO05D002650 1.3e-09 66.6 37 78.4
Lj3g0001457 Lotus japonicus HOM05D002439 ORTHO05D002650 1.7e-09 66.2 39 74.4
Medtr4g079680 Medicago truncatula HOM05D002439 ORTHO05D002650 1.7e-09 66.2 37 78.4
PSO541G4514 Papaver somniferum HOM05D002439 ORTHO05D002650 1.7e-09 66.2 37 75.7
Thecc.01G243900 Theobroma cacao HOM05D002439 ORTHO05D002650 3.0e-09 65.5 39 82.1
Duzib264G1300 Durio zibethinus HOM05D002439 ORTHO05D002650 3.9e-09 65.1 39 82.1
Glyma.13G231900 Glycine max HOM05D002439 ORTHO05D002650 3.9e-09 65.1 38 78.9
Gohir.A10G154100 Gossypium hirsutum HOM05D002439 ORTHO05D002650 3.9e-09 65.1 39 82.1
Gohir.D10G112000 Gossypium hirsutum HOM05D002439 ORTHO05D002650 3.9e-09 65.1 39 82.1
Gorai.011G123800 Gossypium raimondii HOM05D002439 ORTHO05D002650 3.9e-09 65.1 39 82.1
GSVIVG01020672001 Vitis vinifera HOM05D002439 ORTHO05D002650 3.9e-09 65.1 39 84.6
AT2G31090 Arabidopsis thaliana HOM05D002439 ORTHO05D002650 5.1e-09 64.7 81 46.9
Carub.0004s1235 Capsella rubella HOM05D002439 ORTHO05D002650 5.1e-09 64.7 81 46.9
Aa31LG5G5810 Aethionema arabicum HOM05D002439 ORTHO05D002650 6.6e-09 64.3 37 83.8
Cc05_g08100 Coffea canephora HOM05D002439 ORTHO05D002650 6.6e-09 64.3 39 69.2
TWI63G1494 Tripterygium wilfordii HOM05D002439 ORTHO05D002650 6.6e-09 64.3 38 76.3
AL4G26280 Arabidopsis lyrata HOM05D002439 ORTHO05D002650 8.7e-09 63.9 39 79.5
Manes.16G036300 Manihot esculenta HOM05D002439 ORTHO05D002650 8.7e-09 63.9 38 73.7
GSVIVG01021183001 Vitis vinifera HOM05D000001 ORTHO05D008780 8.7e-09 63.9 38 78.9
CARHR124680 Cardamine hirsuta HOM05D002439 ORTHO05D002650 1.1e-08 63.5 37 83.8
Duzib187G0907 Durio zibethinus HOM05D002439 ORTHO05D002650 1.1e-08 63.5 39 76.9
PGR142G3273 Punica granatum HOM05D002439 ORTHO05D002650 1.1e-08 63.5 39 76.9
THA.LOC104826225 Tarenaya hassleriana HOM05D002439 ORTHO05D002650 1.1e-08 63.5 39 76.9
CSS0017592 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 1.5e-08 63.2 37 78.4
Hund00982 Selenicereus undatus HOM05D002439 ORTHO05D002650 1.5e-08 63.2 39 74.4
CDE08G0976 Ceratophyllum demersum HOM05D002439 ORTHO05D002650 1.9e-08 62.8 38 76.3
Actinidia23655 Actinidia chinensis HOM05D002439 ORTHO05D002650 2.5e-08 62.4 36 80.6
CSS0010712 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 2.5e-08 62.4 36 75.0
Rhsim06G0133400 Rhododendron simsii HOM05D002439 ORTHO05D002650 2.5e-08 62.4 41 68.3
Sc21g0003850 Simmondsia chinensis HOM05D002439 ORTHO05D002650 2.5e-08 62.4 39 74.4
CANSAT35G1245 Cannabis sativa HOM05D002439 ORTHO05D002650 3.3e-08 62.0 36 77.8
MD05G1304200 Malus domestica HOM05D002439 ORTHO05D002650 3.3e-08 62.0 36 77.8
MD10G1283600 Malus domestica HOM05D002439 ORTHO05D002650 3.3e-08 62.0 36 77.8
Hma1.2p1_0155F.1_g068350 Hydrangea macrophylla HOM05D002439 ORTHO05D002650 4.3e-08 61.6 36 75.0
Lj6g0022423 Lotus japonicus HOM05D002439 ORTHO05D002650 4.3e-08 61.6 38 73.7
Thecc.06G174500 Theobroma cacao HOM05D002439 ORTHO05D002650 4.3e-08 61.6 33 87.9
unitig_747.g21619 Utricularia gibba HOM05D002439 ORTHO05D002650 4.3e-08 61.6 39 74.4
Thhalv10017452m.g Eutrema salsugineum HOM05D002439 ORTHO05D002650 5.6e-08 61.2 39 76.9
Phvul.006G177900 Phaseolus vulgaris HOM05D002439 ORTHO05D002650 5.6e-08 61.2 38 71.1
HPP92_021495 Vanilla planifolia HOM05D002439 ORTHO05D002650 5.6e-08 61.2 37 73.0
Atru.chr10.1708 Acer truncatum HOM05D002439 ORTHO05D002650 7.3e-08 60.8 36 77.8
FAN02G0825 Fragaria x ananassa HOM05D002439 ORTHO05D205760 7.3e-08 60.8 98 40.8
Gohir.D05G159100 Gossypium hirsutum HOM05D002439 ORTHO05D002650 7.3e-08 60.8 33 81.8
A04p23860 Brassica napus HOM05D002439 ORTHO05D002650 9.6e-08 60.5 39 76.9
BraA04t17909Z Brassica rapa HOM05D002439 ORTHO05D002650 9.6e-08 60.5 39 76.9
vmacro15962 Vaccinium macrocarpon HOM05D002439 ORTHO05D002650 9.6e-08 60.5 34 76.5
BcaB06g28414 Brassica carinata HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 76.9
BcaB06g28491 Brassica carinata HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 76.9
C04p60360 Brassica napus HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 76.9
BolC4t27536H Brassica oleracea HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 76.9
Lalb_Chr03g0029851 Lupinus albus HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 74.4
Hund07836 Selenicereus undatus HOM05D002439 ORTHO05D002650 1.3e-07 60.1 39 74.4
Gorai.009G164200 Gossypium raimondii HOM05D002439 ORTHO05D002650 1.6e-07 59.7 33 78.8
Prupe.4G058200 Prunus persica HOM05D002439 ORTHO05D002650 1.6e-07 59.7 36 69.4
PGR042G3884 Punica granatum HOM05D002439 ORTHO05D002650 1.6e-07 59.7 33 81.8
Solyc10g008730.3 Solanum lycopersicum HOM05D002439 ORTHO05D002650 1.6e-07 59.7 36 69.4
Sopen10g004500 Solanum pennellii HOM05D002439 ORTHO05D002650 1.6e-07 59.7 36 69.4
PGSC0003DMG400026623 Solanum tuberosum HOM05D002439 ORTHO05D002650 1.6e-07 59.7 36 69.4
ATR0602G104 Amborella trichopoda HOM05D002439 ORTHO05D002650 2.1e-07 59.3 37 73.0
DCAR_007970 Daucus carota HOM05D002439 ORTHO05D002650 2.1e-07 59.3 40 75.0
Duzib160G0435 Durio zibethinus HOM05D002439 ORTHO05D002650 2.1e-07 59.3 33 81.8
ECA234G2758 Erigeron canadensis HOM05D002439 ORTHO05D002650 2.1e-07 59.3 36 72.2
COL.COLO4_36294 Corchorus olitorius HOM05D002439 ORTHO05D002650 2.8e-07 58.9 39 74.4
Psat1g199640 Pisum sativum HOM05D002439 ORTHO05D002650 2.8e-07 58.9 36 75.0
Psat4g185040 Pisum sativum HOM05D002439 ORTHO05D002650 2.8e-07 58.9 36 75.0
SalBow7G0474 Salvia bowleyana HOM05D002439 ORTHO05D002650 2.8e-07 58.9 41 68.3
CiPaw.10G057300 Carya illinoinensis HOM05D002439 ORTHO05D002650 3.6e-07 58.5 33 75.8
SEGI_11049 Sequoiadendron giganteum HOM05D002439 ORTHO05D002650 3.6e-07 58.5 39 64.1
CSS0011963 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 4.8e-07 58.2 35 74.3
CSS0044279 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 4.8e-07 58.2 35 74.3
CAN.G168.10 Capsicum annuum HOM05D002439 ORTHO05D002650 4.8e-07 58.2 36 69.4
Prupe.8G118700 Prunus persica HOM05D002439 ORTHO05D002650 4.8e-07 58.2 35 77.1
DCAR_009756 Daucus carota HOM05D002439 ORTHO05D002650 6.2e-07 57.8 33 81.8
Eucgr.E02672 Eucalyptus grandis HOM05D002439 ORTHO05D002650 6.2e-07 57.8 31 80.6
CSS0014872 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 8.1e-07 57.4 33 75.8
CSS0024442 Camellia sinensis var. sinensis HOM05D002439 ORTHO05D002650 8.1e-07 57.4 33 75.8
Eucgr.F03298 Eucalyptus grandis HOM05D002439 ORTHO05D002650 8.1e-07 57.4 34 64.7
Medtr2g015540 Medicago truncatula HOM05D002439 ORTHO05D002650 8.1e-07 57.4 36 77.8
arahy.Tifrunner.gnm1.ann1.4PQ52P Arachis hypogaea HOM05D002439 ORTHO05D002650 1.1e-06 57.0 35 65.7
DCAR_004022 Daucus carota HOM05D002439 ORTHO05D002650 1.1e-06 57.0 38 73.7
Dinv36011 Davidia involucrata HOM05D002439 ORTHO05D002650 1.1e-06 57.0 35 71.4
arahy.Tifrunner.gnm1.ann1.668WW2 Arachis hypogaea HOM05D002439 ORTHO05D002650 1.4e-06 56.6 35 65.7
arahy.Tifrunner.gnm1.ann1.P3ZWTW Arachis hypogaea HOM05D002439 ORTHO05D002650 1.4e-06 56.6 35 65.7
Glyma.13G292000 Glycine max HOM05D002439 ORTHO05D002650 1.4e-06 56.6 30 76.7
RcHm_v2.0_Chr5g0010171 Rosa chinensis HOM05D002439 ORTHO05D002650 1.4e-06 56.6 36 72.2
TPR.G11783 Trifolium pratense HOM05D001155 ORTHO05D001080 1.4e-06 56.6 36 72.2
Cc02_g14480 Coffea canephora HOM05D002439 ORTHO05D002650 1.8e-06 56.2 37 70.3
Glyma.12G209300 Glycine max HOM05D002439 ORTHO05D002650 1.8e-06 56.2 30 73.3
Lsat_1_v5_gn_7_23441 Lactuca sativa HOM05D002439 ORTHO05D002650 1.8e-06 56.2 35 74.3
Lalb_Chr01g0005071 Lupinus albus HOM05D002439 ORTHO05D002650 1.8e-06 56.2 36 69.4
HPP92_023339 Vanilla planifolia HOM05D002439 ORTHO05D002650 1.8e-06 56.2 36 63.9
PSO541G4196 Papaver somniferum HOM05D002439 ORTHO05D002650 2.4e-06 55.8 34 64.7
PSO675G3020 Papaver somniferum HOM05D002439 ORTHO05D002650 2.4e-06 55.8 34 64.7
vmacro11894 Vaccinium macrocarpon HOM05D002439 ORTHO05D002650 2.4e-06 55.8 32 71.9
GSVIVG01014277001 Vitis vinifera HOM05D002439 ORTHO05D002650 2.4e-06 55.8 32 68.8
Os01g0214500 Oryza sativa ssp. japonica HOM05D002439 ORTHO05D002650 3.1e-06 55.5 37 62.2
Sabra04G0035400 Salix brachista HOM05D002439 ORTHO05D002650 3.1e-06 55.5 35 74.3
AL3G53600 Arabidopsis lyrata HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
BcaB08g34916 Brassica carinata HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
BcaC07g41207 Brassica carinata HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
BcaC07g41211 Brassica carinata HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
A09p58840 Brassica napus HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
C08p42170 Brassica napus HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
BolC8t51776H Brassica oleracea HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
BraA09t41270Z Brassica rapa HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
CARHR111130 Cardamine hirsuta HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
CDE08G0607 Ceratophyllum demersum HOM05D002439 ORTHO05D002650 4.0e-06 55.1 34 67.6
Migut.M00777 Erythranthe guttata HOM05D002439 ORTHO05D002650 4.0e-06 55.1 31 67.7
Thhalv10002140m.g Eutrema salsugineum HOM05D002439 ORTHO05D002650 4.0e-06 55.1 32 71.9
FAN21G3542 Fragaria x ananassa HOM05D002439 ORTHO05D002650 4.0e-06 55.1 36 69.4
BcaB03g16851 Brassica carinata HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
BcaC06g36743 Brassica carinata HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
A07p00190 Brassica napus HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
C07p00480 Brassica napus HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
BolC7t40494H Brassica oleracea HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
BraA07t27812Z Brassica rapa HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
Carub.0003s3504 Capsella rubella HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
CiPaw.11G167100 Carya illinoinensis HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 68.8
FAN11G2819 Fragaria x ananassa HOM05D002439 ORTHO05D008780 5.3e-06 54.7 36 66.7
FAN16G0755 Fragaria x ananassa HOM05D002439 ORTHO05D008780 5.3e-06 54.7 36 66.7
FAN28G1289 Fragaria x ananassa HOM05D002439 ORTHO05D002650 5.3e-06 54.7 36 66.7
Lj3g0021690 Lotus japonicus HOM05D002439 ORTHO05D002650 5.3e-06 54.7 37 62.2
Manes.03G105200 Manihot esculenta HOM05D002439 ORTHO05D002650 5.3e-06 54.7 31 71.0
Sp3g33780 Schrenkiella parvula HOM05D002439 ORTHO05D002650 5.3e-06 54.7 32 71.9
Actinidia35981 Actinidia chinensis HOM05D002439 ORTHO05D002650 6.9e-06 54.3 34 64.7
Haze_09402 Corylus avellana HOM05D002439 ORTHO05D002650 6.9e-06 54.3 34 58.8
Haze_09403 Corylus avellana HOM05D002439 ORTHO05D002650 6.9e-06 54.3 34 58.8
Dinv20209 Davidia involucrata HOM05D000183 ORTHO05D000100 6.9e-06 54.3 33 69.7
Manes.12G090100 Manihot esculenta HOM05D002439 ORTHO05D002650 6.9e-06 54.3 32 71.9
PSO133G0034 Papaver somniferum HOM05D002439 ORTHO05D002650 6.9e-06 54.3 34 61.8
Potri.011G063900 Populus trichocarpa HOM05D002439 ORTHO05D002650 6.9e-06 54.3 33 72.7
Potri.017G015900 Populus trichocarpa HOM05D002439 ORTHO05D002650 6.9e-06 54.3 32 71.9
PGR031G2360 Punica granatum HOM05D002439 ORTHO05D002650 6.9e-06 54.3 32 65.6
Sabra07G0110100 Salix brachista HOM05D002439 ORTHO05D002650 6.9e-06 54.3 32 71.9
Cfa000578 Carpinus fangiana HOM05D032084 ORTHO05D002650 9.0e-06 53.9 29 86.2
ClCG00G000670 Citrullus lanatus HOM05D002439 ORTHO05D002650 9.0e-06 53.9 32 68.8
Potri.007G136800 Populus trichocarpa HOM05D002439 ORTHO05D002650 9.0e-06 53.9 32 68.8
PGR142G2935 Punica granatum HOM05D002439 ORTHO05D002650 9.0e-06 53.9 32 65.6
TPR.G6405 Trifolium pratense HOM05D002439 ORTHO05D002650 9.0e-06 53.9 31 77.4


User provided reference genes

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