Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p038601 Quercus lobata HOM05D006441 ORTHO05D008203 1.5e-80 302.8 147 100.0
QL06p038630 Quercus lobata HOM05D006441 ORTHO05D008203 3.5e-13 79.0 45 88.9
Ciclev10025205m.g Citrus clementina HOM05D006441 ORTHO05D008203 8.6e-12 74.3 45 80.0
Lalb_Chr14g0365131 Lupinus albus HOM05D006441 ORTHO05D008203 1.1e-11 73.9 45 82.2
arahy.Tifrunner.gnm1.ann1.FY2PML Arachis hypogaea HOM05D006441 ORTHO05D008203 1.5e-11 73.6 45 82.2
arahy.Tifrunner.gnm1.ann1.H9DIKV Arachis hypogaea HOM05D006441 ORTHO05D008203 1.5e-11 73.6 45 82.2
LjContig00049g0002658 Lotus japonicus HOM05D006441 ORTHO05D008203 2.5e-11 72.8 45 82.2
Atru.chr3.1073 Acer truncatum HOM05D006441 ORTHO05D008203 3.3e-11 72.4 41 87.8
CANSAT01G2205 Cannabis sativa HOM05D006441 ORTHO05D008203 5.6e-11 71.6 41 87.8
CDE07G0466 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 5.6e-11 71.6 45 77.8
TAR628G0068 Trochodendron aralioides HOM05D006441 ORTHO05D008203 5.6e-11 71.6 45 82.2
ClCG07G009800 Citrullus lanatus HOM05D006441 ORTHO05D008203 7.3e-11 71.2 45 80.0
Glyma.02G280500 Glycine max HOM05D006441 ORTHO05D008203 7.3e-11 71.2 45 80.0
VMungo0647G1795 Vigna mungo HOM05D006441 ORTHO05D008203 7.3e-11 71.2 45 80.0
Nn6g34544 Nelumbo nucifera HOM05D006441 ORTHO05D008203 9.5e-11 70.9 45 80.0
Thecc.01G077600 Theobroma cacao HOM05D006441 ORTHO05D008203 1.2e-10 70.5 45 77.8
MELO3C024853.2 Cucumis melo HOM05D006441 ORTHO05D008203 1.6e-10 70.1 45 77.8
CsaV3_4G008510 Cucumis sativus L. HOM05D006441 ORTHO05D008203 1.6e-10 70.1 45 77.8
CiPaw.07G037300 Carya illinoinensis HOM05D006441 ORTHO05D008203 2.1e-10 69.7 50 78.0
Phvul.008G200200 Phaseolus vulgaris HOM05D006441 ORTHO05D008203 2.1e-10 69.7 45 77.8
Ca_06220_v3 Cicer arietinum L. HOM05D006441 ORTHO05D008203 2.8e-10 69.3 45 73.3
COL.COLO4_11626 Corchorus olitorius HOM05D006441 ORTHO05D008203 2.8e-10 69.3 45 75.6
Cpa.g.sc129.63 Carica papaya HOM05D006441 ORTHO05D008203 3.6e-10 68.9 45 77.8
Manes.12G118300 Manihot esculenta HOM05D006441 ORTHO05D008203 3.6e-10 68.9 45 77.8
Haze_03978 Corylus avellana HOM05D006441 ORTHO05D008203 4.7e-10 68.6 45 80.0
GSVIVG01002450001 Vitis vinifera HOM05D006441 ORTHO05D008203 4.7e-10 68.6 45 75.6
Duzib147G0493 Durio zibethinus HOM05D006441 ORTHO05D008203 6.1e-10 68.2 45 77.8
Gohir.A11G211600 Gossypium hirsutum HOM05D006441 ORTHO05D008203 6.1e-10 68.2 45 75.6
Gorai.007G227000 Gossypium raimondii HOM05D006441 ORTHO05D008203 6.1e-10 68.2 45 75.6
Sed0000343 Sechium edule HOM05D006441 ORTHO05D008203 6.1e-10 68.2 42 78.6
Aqoxy6G02956 Aquilegia oxysepala HOM05D006441 ORTHO05D008203 8.0e-10 67.8 45 71.1
Solyc02g092010.4 Solanum lycopersicum HOM05D006441 ORTHO05D008203 8.0e-10 67.8 41 80.5
Sopen02g036590 Solanum pennellii HOM05D006441 ORTHO05D008203 8.0e-10 67.8 41 80.5
CAN.G1343.13 Capsicum annuum HOM05D006441 ORTHO05D008203 1.0e-09 67.4 45 73.3
Cfa006781 Carpinus fangiana HOM05D006441 ORTHO05D008203 1.4e-09 67.0 45 77.8
PGSC0003DMG400021428 Solanum tuberosum HOM05D006441 ORTHO05D008203 1.4e-09 67.0 45 73.3
PSO541G6514 Papaver somniferum HOM05D006441 ORTHO05D008203 1.8e-09 66.6 41 75.6
PSO675G4807 Papaver somniferum HOM05D006441 ORTHO05D008203 1.8e-09 66.6 41 75.6
Actinidia36417 Actinidia chinensis HOM05D006441 ORTHO05D008203 2.3e-09 66.2 38 78.9
Nitab4.5_0000142g0480 Nicotiana tabacum HOM05D006441 ORTHO05D008203 3.1e-09 65.9 41 78.0
CSS0047485 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 4.0e-09 65.5 41 75.6
HPP92_008937 Vanilla planifolia HOM05D006441 ORTHO05D008203 5.2e-09 65.1 38 81.6
Gohir.D11G211300 Gossypium hirsutum HOM05D006441 ORTHO05D008203 6.8e-09 64.7 45 73.3
Nitab4.5_0000776g0060 Nicotiana tabacum HOM05D006441 ORTHO05D008203 6.8e-09 64.7 41 75.6
PGR102G2456 Punica granatum HOM05D006441 ORTHO05D008203 6.8e-09 64.7 45 73.3
Cc07_g07440 Coffea canephora HOM05D006441 ORTHO05D008203 8.9e-09 64.3 45 71.1
Dinv23055 Davidia involucrata HOM05D006441 ORTHO05D008203 8.9e-09 64.3 41 75.6
Medtr5g089970 Medicago truncatula HOM05D006441 ORTHO05D008203 8.9e-09 64.3 45 71.1
vmacro05378 Vaccinium macrocarpon HOM05D006441 ORTHO05D008203 8.9e-09 64.3 53 64.2
ATR0019G023 Amborella trichopoda HOM05D006441 ORTHO05D008203 1.2e-08 63.9 41 78.0
Lj4A166T80 Lonicera japonica HOM05D006441 ORTHO05D008203 1.2e-08 63.9 41 73.2
MD02G1190600 Malus domestica HOM05D006441 ORTHO05D008203 1.2e-08 63.9 41 75.6
Psat2g019320 Pisum sativum HOM05D006441 ORTHO05D008203 1.2e-08 63.9 44 72.7
CSS0036817 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 1.5e-08 63.5 41 73.2
THA.LOC104810646 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 1.5e-08 63.5 41 80.5
THA.LOC104821215 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 1.5e-08 63.5 41 80.5
FAN26G0165 Fragaria x ananassa HOM05D006441 ORTHO05D008203 2.0e-08 63.2 46 76.1
Peaxi162Scf00096g01848 Petunia axillaris HOM05D006441 ORTHO05D008203 2.0e-08 63.2 45 68.9
Rhsim10G0094400 Rhododendron simsii HOM05D006441 ORTHO05D008203 2.0e-08 63.2 41 73.2
Zm00001eb055970 Zea mays HOM05D006441 ORTHO05D008203 2.0e-08 63.2 45 68.9
TPR.G19350 Trifolium pratense HOM05D006441 ORTHO05D008203 2.6e-08 62.8 45 71.1
DCAR_010797 Daucus carota HOM05D006441 ORTHO05D008203 3.4e-08 62.4 41 73.2
Lsat_1_v5_gn_3_85860 Lactuca sativa HOM05D006441 ORTHO05D008203 3.4e-08 62.4 45 66.7
HanXRQChr12g0377011 Helianthus annuus HOM05D006441 ORTHO05D008203 5.8e-08 61.6 45 66.7
MSTRG.23600 Avicennia marina HOM05D006441 ORTHO05D008203 7.5e-08 61.2 41 73.2
FAN23G0818 Fragaria x ananassa HOM05D006441 ORTHO05D008203 7.5e-08 61.2 46 73.9
FAN28G0499 Fragaria x ananassa HOM05D006441 ORTHO05D000355 7.5e-08 61.2 46 73.9
RcHm_v2.0_Chr1g0321831 Rosa chinensis HOM05D006441 ORTHO05D008203 7.5e-08 61.2 46 73.9
RcHm_v2.0_Chr2g0109061 Rosa chinensis HOM05D006441 ORTHO05D008203 7.5e-08 61.2 46 73.9
Sc16g0002790 Simmondsia chinensis HOM05D006441 ORTHO05D008203 7.5e-08 61.2 45 66.7
Prupe.6G215400 Prunus persica HOM05D006441 ORTHO05D008203 9.8e-08 60.8 49 67.3
ECA246G2498 Erigeron canadensis HOM05D006441 ORTHO05D008203 1.7e-07 60.1 44 65.9
FvH4_1g18350 Fragaria vesca HOM05D006441 ORTHO05D008203 2.2e-07 59.7 46 71.7
FAN19G0231 Fragaria x ananassa HOM05D006441 ORTHO05D008203 2.2e-07 59.7 46 71.7
MD15G1301700 Malus domestica HOM05D006441 ORTHO05D008203 2.9e-07 59.3 40 70.0
Os03g0727900 Oryza sativa ssp. japonica HOM05D006441 ORTHO05D008203 2.9e-07 59.3 41 70.7
SGA_v2.0_scaffold269G46276 Striga asiatica HOM05D006441 ORTHO05D008203 2.9e-07 59.3 41 75.6
Thhalv10010236m.g Eutrema salsugineum HOM05D006441 ORTHO05D008203 4.9e-07 58.5 45 62.2
Oeu011414.1 Olea europaea HOM05D006441 ORTHO05D008203 6.4e-07 58.2 45 66.7
Sabra07G0005900 Salix brachista HOM05D006441 ORTHO05D008203 6.4e-07 58.2 41 70.7
Sp5g12360 Schrenkiella parvula HOM05D006441 ORTHO05D008203 6.4e-07 58.2 45 62.2
TWI53G1431 Tripterygium wilfordii HOM05D006441 ORTHO05D008203 6.4e-07 58.2 41 73.2
Hund16422 Selenicereus undatus HOM05D006441 ORTHO05D008203 8.3e-07 57.8 41 68.3
Potri.007G007700 Populus trichocarpa HOM05D006441 ORTHO05D008203 1.4e-06 57.0 41 70.7
unitig_899.g14592 Utricularia gibba HOM05D006441 ORTHO05D008203 1.4e-06 57.0 41 65.9
BcaC07g39436 Brassica carinata HOM05D006441 ORTHO05D008203 1.9e-06 56.6 45 62.2
C08p24750 Brassica napus HOM05D006441 ORTHO05D008203 1.9e-06 56.6 45 62.2
BolC8t50089H Brassica oleracea HOM05D006441 ORTHO05D008203 1.9e-06 56.6 45 62.2
Eucgr.H02336 Eucalyptus grandis HOM05D006441 ORTHO05D008203 1.9e-06 56.6 50 66.0
Migut.H00320 Erythranthe guttata HOM05D006441 ORTHO05D008203 4.1e-06 55.5 41 65.9
BcaB01g00678 Brassica carinata HOM05D006441 ORTHO05D008203 5.4e-06 55.1 45 62.2
A06p17970 Brassica napus HOM05D006441 ORTHO05D008203 5.4e-06 55.1 45 62.2
BraA06t24888Z Brassica rapa HOM05D006441 ORTHO05D008203 5.4e-06 55.1 45 62.2
SEGI_39991 Sequoiadendron giganteum HOM05D006441 ORTHO05D008203 7.0e-06 54.7 45 60.0
AUR62004040 Chenopodium quinoa HOM05D006441 ORTHO05D008203 9.2e-06 54.3 41 63.4
AUR62007550 Chenopodium quinoa HOM05D006441 ORTHO05D008203 9.2e-06 54.3 41 63.4


User provided reference genes

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