Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p038456 Quercus lobata HOM05D005443 ORTHO05D009021 4.3e-130 468.0 236 100.0
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.8e-73 279.3 191 74.3
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 2.4e-72 276.2 191 73.8
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 4.1e-56 222.2 185 62.7
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 1.1e-53 214.2 181 63.0
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 3.2e-53 212.6 191 61.3
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 9.8e-50 201.1 199 58.3
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 1.3e-49 200.7 199 55.8
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 6.3e-49 198.4 185 57.3
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 2.0e-47 193.4 201 55.2
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 2.9e-46 189.5 190 54.2
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 3.2e-45 186.0 149 65.1
Hma1.2p1_1201F.1_g266680 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 1.4e-43 180.6 194 53.1
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.8e-43 180.3 180 55.6
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.8e-43 180.3 180 55.6
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 6.8e-43 178.3 193 51.3
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 5.7e-42 175.3 205 50.7
PGR042G2153 Punica granatum HOM05D005443 ORTHO05D009021 1.3e-41 174.1 196 49.0
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 1.7e-41 173.7 179 54.2
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 3.7e-41 172.6 193 53.9
CsaV3_7G024480 Cucumis sativus L. HOM05D005443 ORTHO05D009021 8.3e-41 171.4 153 56.2
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 1.1e-40 171.0 184 54.9
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 1.4e-40 170.6 175 54.9
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.4e-40 169.9 109 80.7
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 7.0e-40 168.3 148 58.8
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 7.0e-40 168.3 127 65.4
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 1.3e-38 164.1 164 57.3
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 3.8e-38 162.5 163 55.8
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 1.1e-37 161.0 170 55.9
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 1.5e-37 160.6 150 58.7
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 3.3e-37 159.5 186 51.6
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 7.2e-37 158.3 135 57.8
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 1.2e-36 157.5 189 47.1
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 1.6e-36 157.1 170 52.4
PSO675G8511 Papaver somniferum HOM05D005443 ORTHO05D009021 2.1e-36 156.8 174 52.3
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 3.6e-36 156.0 163 54.0
Atru.chr2.3463 Acer truncatum HOM05D005443 ORTHO05D009021 4.7e-36 155.6 135 58.5
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 4.7e-36 155.6 147 55.8
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 4.7e-36 155.6 163 54.0
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 6.1e-36 155.2 147 55.8
Nitab4.5_0000512g0150 Nicotiana tabacum HOM05D005443 ORTHO05D009021 6.1e-36 155.2 142 57.0
Nitab4.5_0002526g0090 Nicotiana tabacum HOM05D005443 ORTHO05D009021 6.1e-36 155.2 137 57.7
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 6.1e-36 155.2 180 48.3
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 8.0e-36 154.8 227 41.4
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 2.3e-35 153.3 153 50.3
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 3.0e-35 152.9 154 51.3
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 4.0e-35 152.5 154 50.6
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 1.2e-34 151.0 184 50.0
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 4.4e-34 149.1 128 58.6
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 5.7e-34 148.7 162 53.1
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 7.5e-34 148.3 192 46.9
Dinv23652 Davidia involucrata HOM05D005443 ORTHO05D009021 7.5e-34 148.3 107 71.0
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 7.5e-34 148.3 180 48.9
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 7.5e-34 148.3 156 51.9
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 1.3e-33 147.5 179 45.3
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 2.2e-33 146.7 185 44.9
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 2.9e-33 146.4 147 53.7
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 2.9e-33 146.4 194 46.9
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 8.3e-33 144.8 181 47.5
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 1.1e-32 144.4 204 44.1
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 7.0e-32 141.7 156 47.4
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 1.6e-31 140.6 185 47.0
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 2.7e-31 139.8 147 49.7
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 2.7e-31 139.8 171 47.4
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 4.6e-31 139.0 140 50.7
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 1.0e-30 137.9 161 48.4
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 2.3e-30 136.7 199 42.2
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 3.9e-30 136.0 179 44.1
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 6.6e-30 135.2 180 43.9
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 1.1e-29 134.4 167 47.3
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 1.5e-29 134.0 125 56.0
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 1.2e-28 131.0 113 60.2
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 6.2e-28 128.6 145 51.7
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 1.0e-27 127.9 107 61.7
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 1.8e-27 127.1 107 58.9
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 4.4e-26 122.5 121 52.9
ATR0680G174 Amborella trichopoda HOM05D005443 ORTHO05D009021 5.8e-26 122.1 124 50.0
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 7.5e-26 121.7 116 54.3
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 9.8e-26 121.3 107 56.1
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 2.2e-25 120.2 137 45.3
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 2.2e-25 120.2 107 57.9
Hund07945 Selenicereus undatus HOM05D005443 ORTHO05D009021 1.0e-22 111.3 147 43.5
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 1.3e-22 110.9 164 40.2
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 6.2e-20 102.1 103 52.4
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 6.2e-20 102.1 103 52.4
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 5.2e-19 99.0 76 64.5
Glyma.12G111866 Glycine max HOM05D005443 ORTHO05D009021 1.4e-16 90.9 70 65.7
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 7.1e-16 88.6 132 37.9
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 9.2e-16 88.2 112 48.2
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 2.7e-15 86.7 72 61.1
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 1.9e-13 80.5 180 33.9
Atru.chr2.3477 Acer truncatum HOM05D005443 ORTHO05D009021 5.6e-13 79.0 75 60.0
DCAR_016519 Daucus carota HOM05D005443 ORTHO05D009021 1.4e-11 74.3 83 47.0
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 1.8e-11 73.9 145 34.5
Gohir.D10G119100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 2.3e-11 73.6 74 55.4
EL10Ac9g20752 Beta vulgaris HOM05D005443 ORTHO05D009021 6.8e-11 72.0 111 37.8
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 6.8e-11 72.0 90 46.7
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 8.9e-11 71.6 75 49.3
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 4.4e-10 69.3 118 39.0
Mapoly0061s0039 Marchantia polymorpha HOM05D005443 ORTHO05D009021 7.6e-10 68.6 145 32.4
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 4.9e-09 65.9 49 59.2
EL10Ac9g20753 Beta vulgaris HOM05D005443 ORTHO05D009021 1.9e-08 63.9 74 43.2
AUR62037371 Chenopodium quinoa HOM05D005443 ORTHO05D009021 4.1e-08 62.8 79 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5557 Anthoceros agrestis HOM05D005443 ORTHO05D009021 2.7e-07 60.1 131 36.6
Zm00001eb306570 Zea mays HOM05D005443 ORTHO05D009021 3.5e-07 59.7 50 54.0
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.8e-07 58.5 151 31.1


User provided reference genes

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