Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.5e-159 566.2 297 100.0
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 4.4e-132 474.9 296 83.4
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-130 469.9 298 82.9
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 4.1e-130 468.4 298 82.6
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 2.7e-129 465.7 298 82.2
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.0e-128 462.2 293 82.9
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 8.6e-128 460.7 295 81.0
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.5e-127 459.1 291 81.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.3e-127 458.8 295 83.7
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 5.6e-127 458.0 292 79.8
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 9.5e-127 457.2 291 82.1
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 6.2e-126 454.5 291 80.4
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.2e-126 454.5 298 79.9
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 6.2e-126 454.5 298 79.9
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.0e-126 454.1 294 80.3
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.4e-125 453.4 292 79.1
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.2e-125 451.4 298 79.2
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.9e-125 450.7 292 78.8
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.9e-125 450.7 292 78.8
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 8.9e-125 450.7 291 81.1
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.5e-124 449.9 299 78.3
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.4e-124 448.4 296 78.0
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 5.8e-124 448.0 291 79.7
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 7.5e-124 447.6 299 78.6
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 9.8e-124 447.2 297 76.4
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 3.7e-123 445.3 287 80.1
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 6.4e-123 444.5 296 78.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.1e-122 443.7 294 77.6
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.1e-122 443.7 297 77.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.4e-122 443.4 297 76.4
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.9e-122 443.0 292 77.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.2e-122 442.2 301 78.4
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 4.1e-122 441.8 291 79.0
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.0e-122 441.0 354 70.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 9.2e-122 440.7 296 76.7
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.2e-121 440.3 297 76.4
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-121 440.3 296 76.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.0e-120 437.2 299 76.6
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.3e-120 436.8 297 76.4
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 2.3e-120 436.0 295 77.3
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.3e-120 436.0 288 78.5
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.9e-120 435.3 301 77.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 6.6e-120 434.5 291 78.0
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.6e-120 434.1 297 76.4
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.6e-120 434.1 297 76.4
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.9e-119 433.0 297 75.8
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.9e-119 433.0 292 76.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.3e-119 431.8 296 77.7
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 4.3e-119 431.8 295 75.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.6e-119 431.4 295 78.0
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.6e-119 431.4 291 76.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.6e-118 429.9 299 76.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.8e-118 429.1 285 77.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 3.6e-118 428.7 296 75.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.7e-118 428.3 296 75.7
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 4.7e-118 428.3 296 74.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 4.7e-118 428.3 298 75.8
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.1e-117 427.2 296 76.4
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.1e-117 425.6 298 74.2
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 4.0e-117 425.2 284 77.8
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.5e-116 423.3 292 76.0
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.0e-116 422.9 293 75.4
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.6e-116 422.5 288 76.4
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.4e-116 421.8 283 76.7
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 9.9e-116 420.6 284 76.8
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.3e-115 420.2 298 73.5
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 8.3e-115 417.5 298 73.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.1e-114 417.2 307 71.3
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.9e-114 416.4 298 72.5
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.4e-114 416.0 284 77.1
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.4e-114 416.0 274 78.1
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.6e-113 413.3 285 75.4
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 2.1e-113 412.9 286 75.5
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.7e-113 412.5 293 75.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.0e-113 411.4 297 72.7
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 6.0e-113 411.4 291 74.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.0e-112 410.6 288 76.0
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.3e-112 410.2 298 74.8
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.7e-112 409.8 300 72.0
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.3e-112 409.5 292 74.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 3.0e-112 409.1 240 84.2
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.9e-112 408.7 274 78.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.9e-112 408.7 274 78.5
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 5.1e-112 408.3 295 72.9
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 8.6e-112 407.5 347 64.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.6e-110 403.3 332 67.5
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.6e-110 403.3 294 73.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 3.6e-110 402.1 347 64.3
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.4e-109 400.2 323 68.4
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.4e-109 399.4 298 72.8
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.5e-108 396.7 303 71.9
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.5e-108 396.7 290 72.8
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.6e-108 396.0 289 73.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.6e-108 396.0 300 70.3
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.4e-108 395.2 286 75.5
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 5.8e-108 394.8 290 72.4
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 5.8e-108 394.8 290 72.4
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 7.6e-108 394.4 290 72.4
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 7.6e-108 394.4 290 72.4
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 9.9e-108 394.0 308 69.5
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.3e-107 393.7 296 72.6
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.3e-107 393.7 297 71.0
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.2e-107 392.9 298 68.5
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 3.8e-107 392.1 290 72.1
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.4e-106 390.2 288 72.6
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.2e-106 389.0 294 72.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 5.4e-106 388.3 293 71.3
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 7.1e-106 387.9 289 72.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 2.7e-105 386.0 288 71.2
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.7e-105 386.0 292 72.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.7e-104 383.3 291 69.1
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.9e-103 379.8 295 68.5
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.1e-102 376.3 294 68.0
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.6e-102 375.6 298 69.5
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.0e-100 369.8 299 66.9
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.0e-100 369.8 290 66.9
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 4.4e-100 368.6 354 59.9
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 9.9e-100 367.5 270 72.2
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 2.9e-99 365.9 332 63.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.8e-99 365.5 233 79.0
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.4e-98 362.8 296 67.2
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.1e-97 359.8 288 68.8
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 6.0e-97 358.2 227 80.2
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 7.8e-97 357.8 288 67.4
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.0e-96 357.5 229 78.6
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 4.0e-93 345.5 233 77.7
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.2e-92 344.0 253 70.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.9e-91 338.6 297 63.3
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 4.2e-90 335.5 233 75.5
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.4e-85 319.7 221 75.1
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.6e-84 316.2 229 72.1
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.5e-82 308.5 231 71.0
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.3e-82 307.8 229 66.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.9e-80 302.4 219 68.0
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.5e-79 299.7 184 81.5
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 6.2e-78 295.0 273 59.0
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 8.2e-78 294.7 201 72.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.4e-77 293.9 296 57.1
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 5.3e-77 292.0 264 62.1
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.3e-75 287.3 265 60.8
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.7e-75 287.0 197 75.1
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 3.3e-71 272.7 185 75.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.4e-56 224.2 221 52.9
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.1e-55 221.1 227 51.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.0e-52 210.3 183 61.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.6e-49 200.7 239 47.3
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.7e-49 199.1 153 66.0
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.4e-40 171.0 162 57.4
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 2.0e-39 167.2 227 42.3
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 8.0e-25 118.6 285 35.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.3e-24 117.1 70 82.9
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.4e-21 107.1 59 89.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.0e-20 104.0 64 81.2
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-15 88.2 120 46.7
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.3e-11 74.7 47 72.3
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.5e-10 70.5 56 67.9
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 4.9e-06 56.2 32 81.2
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 8.3e-06 55.5 28 85.7


User provided reference genes

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