Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p036062 Quercus lobata HOM05D007319 ORTHO05D008576 6.4e-93 344.0 162 100.0
QL08p036137 Quercus lobata HOM05D007319 ORTHO05D008576 1.1e-79 300.1 195 76.4
CiPaw.04G121400 Carya illinoinensis HOM05D007319 ORTHO05D008576 9.0e-71 270.4 197 67.5
Haze_13028 Corylus avellana HOM05D007319 ORTHO05D008576 3.8e-69 265.0 195 65.6
Cfa014494 Carpinus fangiana HOM05D007319 ORTHO05D008576 1.3e-66 256.5 195 64.6
Thecc.02G167300 Theobroma cacao HOM05D007319 ORTHO05D008576 1.3e-64 250.0 194 62.9
Atru.chr6.3094 Acer truncatum HOM05D007319 ORTHO05D008576 1.2e-62 243.4 196 61.7
Atru.chr6.3563 Acer truncatum HOM05D007319 ORTHO05D008576 2.2e-61 239.2 193 61.7
Duzib132G0482 Durio zibethinus HOM05D007319 ORTHO05D008576 2.9e-61 238.8 193 61.1
COL.COLO4_13062 Corchorus olitorius HOM05D007319 ORTHO05D008576 6.5e-61 237.7 197 60.4
Ciclev10015114m.g Citrus clementina HOM05D007319 ORTHO05D008576 2.7e-59 232.3 193 61.7
Gohir.D11G230600 Gossypium hirsutum HOM05D007319 ORTHO05D008576 7.9e-59 230.7 194 58.2
Gorai.003G066900 Gossypium raimondii HOM05D007319 ORTHO05D008576 7.9e-59 230.7 194 58.2
Hma1.2p1_3430F.1_g336010 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 7.4e-57 224.2 196 56.6
Hma1.2p1_1090F.1_g255770 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 9.6e-57 223.8 197 56.3
TWI18G1078 Tripterygium wilfordii HOM05D007319 ORTHO05D008576 1.6e-56 223.0 194 58.2
CANSAT64G1375 Cannabis sativa HOM05D007319 ORTHO05D008576 1.1e-55 220.3 194 57.7
ClCG02G001500 Citrullus lanatus HOM05D007319 ORTHO05D008576 3.1e-55 218.8 194 59.3
Manes.13G087700 Manihot esculenta HOM05D007319 ORTHO05D008576 5.9e-54 214.5 195 57.4
MELO3C018779.2 Cucumis melo HOM05D007319 ORTHO05D008576 1.0e-53 213.8 194 57.7
Sed0019912 Sechium edule HOM05D007319 ORTHO05D008576 1.0e-53 213.8 194 57.2
Rhsim04G0059100 Rhododendron simsii HOM05D007319 ORTHO05D008576 5.0e-53 211.5 197 54.8
RhsimUnG0197400 Rhododendron simsii HOM05D007319 ORTHO05D008576 5.0e-53 211.5 197 54.8
Cpa.g.sc17.7 Carica papaya HOM05D007319 ORTHO05D008576 1.9e-52 209.5 194 57.2
CsaV3_7G004000 Cucumis sativus L. HOM05D007319 ORTHO05D008576 1.9e-52 209.5 194 56.2
GSVIVG01000444001 Vitis vinifera HOM05D007319 ORTHO05D008576 9.3e-52 207.2 195 55.9
Sabra13G0120700 Salix brachista HOM05D007319 ORTHO05D008576 2.1e-51 206.1 194 54.1
CSS0048621 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 2.7e-51 205.7 197 55.8
TAR626G1179 Trochodendron aralioides HOM05D007319 ORTHO05D008576 2.7e-51 205.7 197 55.8
CSS0043355 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 4.6e-51 204.9 197 55.3
CSS0000364 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 5.1e-50 201.4 196 55.6
vmacro09306 Vaccinium macrocarpon HOM05D007319 ORTHO05D008576 5.1e-50 201.4 195 53.8
Potri.013G121700 Populus trichocarpa HOM05D007319 ORTHO05D008576 8.7e-50 200.7 194 52.1
CSS0021958 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 1.9e-49 199.5 197 54.3
Lj1A744T30 Lonicera japonica HOM05D007319 ORTHO05D008576 8.2e-48 194.1 194 52.6
HanXRQChr17g0543141 Helianthus annuus HOM05D007319 ORTHO05D008576 1.2e-46 190.3 198 50.5
Ciclev10017712m.g Citrus clementina HOM05D007319 ORTHO05D008576 7.7e-46 187.6 177 56.5
Eucgr.A01754 Eucalyptus grandis HOM05D007319 ORTHO05D008576 2.9e-45 185.7 197 49.7
Hund01202 Selenicereus undatus HOM05D007319 ORTHO05D008576 5.0e-45 184.9 194 47.9
DCAR_021209 Daucus carota HOM05D007319 ORTHO05D008576 6.5e-45 184.5 199 48.2
Phvul.011G109000 Phaseolus vulgaris HOM05D007319 ORTHO05D008576 6.5e-45 184.5 193 49.7
PSO541G2656 Papaver somniferum HOM05D007319 ORTHO05D008576 1.1e-44 183.7 194 51.5
Peaxi162Scf00007g01823 Petunia axillaris HOM05D007319 ORTHO05D008576 1.9e-44 183.0 198 49.0
AT1G27410 Arabidopsis thaliana HOM05D007319 ORTHO05D008576 5.5e-44 181.4 193 50.3
ECA246G0686 Erigeron canadensis HOM05D000038 ORTHO05D000689 7.2e-44 181.0 198 48.5
Sp3g33700 Schrenkiella parvula HOM05D007319 ORTHO05D008576 7.2e-44 181.0 193 49.7
AL1G40820 Arabidopsis lyrata HOM05D007319 ORTHO05D008576 1.6e-43 179.9 194 49.0
EL10Ac9g20722 Beta vulgaris HOM05D007319 ORTHO05D008576 2.1e-43 179.5 194 49.0
Ciclev10018156m.g Citrus clementina HOM05D007319 ORTHO05D008576 2.1e-43 179.5 196 50.5
Sc23g0005010 Simmondsia chinensis HOM05D007319 ORTHO05D008576 4.6e-43 178.3 197 46.7
Ah.01g014450 Amaranthus hybridus HOM05D007319 ORTHO05D008576 6.1e-43 177.9 194 49.0
Carub.0001s2595 Capsella rubella HOM05D007319 ORTHO05D008576 1.8e-42 176.4 193 48.7
Cc05_g05710 Coffea canephora HOM05D007319 ORTHO05D008576 8.8e-42 174.1 195 48.2
Psat7g202760 Pisum sativum HOM05D007319 ORTHO05D008576 1.1e-41 173.7 194 49.5
AUR62025153 Chenopodium quinoa HOM05D007319 ORTHO05D008576 2.0e-41 172.9 194 49.0
Ah.01g005180 Amaranthus hybridus HOM05D007319 ORTHO05D008576 4.3e-41 171.8 194 50.5
CARHR027000 Cardamine hirsuta HOM05D007319 ORTHO05D008576 4.3e-41 171.8 194 47.9
THA.LOC104816143 Tarenaya hassleriana HOM05D007319 ORTHO05D008576 4.3e-41 171.8 193 49.2
Actinidia30494 Actinidia chinensis HOM05D007319 ORTHO05D008576 7.4e-41 171.0 159 55.3
BcaB03g16844 Brassica carinata HOM05D007319 ORTHO05D008576 7.4e-41 171.0 194 50.0
PGR042G3383 Punica granatum HOM05D007319 ORTHO05D008576 9.7e-41 170.6 198 48.5
Lsat_1_v5_gn_3_41961 Lactuca sativa HOM05D000912 ORTHO05D008576 2.2e-40 169.5 174 50.0
AUR62033723 Chenopodium quinoa HOM05D007319 ORTHO05D008576 3.7e-40 168.7 194 47.4
MBI02_g03610_MAGBIO Magnolia biondii HOM05D007319 ORTHO05D008576 3.7e-40 168.7 194 48.5
Thhalv10001995m.g Eutrema salsugineum HOM05D007319 ORTHO05D008576 6.3e-40 167.9 196 48.5
A07p00250 Brassica napus HOM05D007319 ORTHO05D008576 8.2e-40 167.5 196 48.0
BraA07t27817Z Brassica rapa HOM05D007319 ORTHO05D008576 8.2e-40 167.5 196 48.0
Dinv13851 Davidia involucrata HOM05D007319 ORTHO05D008576 1.4e-39 166.8 156 54.5
Ca_08326_v3 Cicer arietinum L. HOM05D007319 ORTHO05D008576 1.8e-39 166.4 196 48.5
Lsat_1_v5_gn_3_41840 Lactuca sativa HOM05D007319 ORTHO05D008576 2.4e-39 166.0 210 44.3
Glyma.12G104000 Glycine max HOM05D007319 ORTHO05D008576 6.9e-39 164.5 182 47.8
MSTRG.14170 Avicennia marina HOM05D007319 ORTHO05D008576 9.1e-39 164.1 197 43.7
C07p00530 Brassica napus HOM05D007319 ORTHO05D008576 1.2e-38 163.7 193 48.7
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 1.2e-38 163.7 161 52.2
CSS0049465 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 1.5e-38 163.3 196 48.0
arahy.Tifrunner.gnm1.ann1.74LKV9 Arachis hypogaea HOM05D007319 ORTHO05D008576 3.4e-38 162.2 199 43.7
Lj3g0020364 Lotus japonicus HOM05D007319 ORTHO05D008576 7.7e-38 161.0 185 43.2
Lj3g0006033 Lotus japonicus HOM05D007319 ORTHO05D008576 1.3e-37 160.2 185 42.7
SGA_v2.0_scaffold49G18317 Striga asiatica HOM05D007319 ORTHO05D008576 2.2e-37 159.5 194 45.4
Medtr1g052840 Medicago truncatula HOM05D007319 ORTHO05D008576 2.9e-37 159.1 200 46.5
MBI02_g10998_MAGBIO Magnolia biondii HOM05D003350 ORTHO05D008576 3.2e-36 155.6 194 43.3
Medtr0280s0030 Medicago truncatula HOM05D007319 ORTHO05D008576 7.2e-36 154.5 204 43.1
Migut.H01008 Erythranthe guttata HOM05D007319 ORTHO05D008576 1.6e-35 153.3 195 43.1
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 2.1e-35 152.9 200 43.0
Solyc07g053210.3 Solanum lycopersicum HOM05D007319 ORTHO05D008576 2.7e-35 152.5 131 58.0
Sopen07g026770 Solanum pennellii HOM05D007319 ORTHO05D008576 2.7e-35 152.5 131 58.0
arahy.Tifrunner.gnm1.ann1.RET3PJ Arachis hypogaea HOM05D007319 ORTHO05D008576 7.9e-35 151.0 217 40.1
ATR1132G134 Amborella trichopoda HOM05D003350 ORTHO05D008576 1.0e-34 150.6 195 42.1
CAN.G640.27 Capsicum annuum HOM05D007319 ORTHO05D008576 1.0e-34 150.6 198 44.4
Potri.013G149650 Populus trichocarpa HOM05D007319 ORTHO05D008576 2.3e-34 149.4 194 42.8
SalBow1G4158 Salvia bowleyana HOM05D007319 ORTHO05D008576 3.0e-34 149.1 196 43.9
SalBow1G6686 Salvia bowleyana HOM05D007319 ORTHO05D008576 3.0e-34 149.1 196 43.9
PGSC0003DMG400026178 Solanum tuberosum HOM05D007319 ORTHO05D008576 3.9e-34 148.7 131 57.3
SalBow1G3919 Salvia bowleyana HOM05D007319 ORTHO05D008576 5.1e-34 148.3 196 44.4
Aqoxy3G01438 Aquilegia oxysepala HOM05D003350 ORTHO05D008576 4.4e-33 145.2 206 43.2
Lalb_Chr03g0029031 Lupinus albus HOM05D007319 ORTHO05D008576 2.8e-32 142.5 113 60.2
Nitab4.5_0010290g0020 Nicotiana tabacum HOM05D007319 ORTHO05D008576 3.1e-31 139.0 130 54.6
Zm00001eb369790 Zea mays HOM05D007319 ORTHO05D008576 3.1e-31 139.0 199 41.2
Oeu030702.1 Olea europaea HOM05D007319 ORTHO05D008576 1.2e-27 127.1 113 56.6
BolC7t40499H Brassica oleracea HOM05D007319 ORTHO05D008576 1.7e-24 116.7 112 57.1
SMO144G0017 Selaginella moellendorffii HOM05D003350 ORTHO05D008576 8.0e-19 97.8 185 34.6
BcaC06g36738 Brassica carinata HOM05D007319 ORTHO05D008576 1.7e-16 90.1 154 39.6
Glyma.06G300700 Glycine max HOM05D007319 ORTHO05D008576 6.3e-16 88.2 98 51.0
CDE11G1185 Ceratophyllum demersum HOM05D003350 ORTHO05D008576 7.5e-09 64.7 95 37.9
Gohir.A11G222102 Gossypium hirsutum HOM05D007319 ORTHO05D008576 1.1e-07 60.8 36 66.7
Lsat_1_v5_gn_8_151160 Lactuca sativa HOM05D000017 ORTHO05D000013 4.5e-06 55.5 36 63.9
Nn1g06835 Nelumbo nucifera HOM05D003350 ORTHO05D008576 4.5e-06 55.5 36 61.1


User provided reference genes

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