Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p034874 Quercus lobata HOM05D001703 ORTHO05D005708 4.1e-33 144.1 69 100.0
QL04p035341 Quercus lobata HOM05D001703 ORTHO05D005708 2.9e-10 68.2 33 97.0
Manes.13G145400 Manihot esculenta HOM05D001703 ORTHO05D005708 6.4e-10 67.0 34 91.2
Oeu063215.2 Olea europaea HOM05D001703 ORTHO05D005708 8.4e-10 66.6 34 88.2
Ca_07392_v3 Cicer arietinum L. HOM05D001703 ORTHO05D005708 1.4e-09 65.9 33 93.9
Lj9C561G12 Lonicera japonica HOM05D001703 ORTHO05D005708 1.4e-09 65.9 33 90.9
GSVIVG01018186001 Vitis vinifera HOM05D001703 ORTHO05D005708 1.4e-09 65.9 33 90.9
EL10Ac8g19417 Beta vulgaris HOM05D001703 ORTHO05D005708 1.9e-09 65.5 34 88.2
Medtr2g020660 Medicago truncatula HOM05D001703 ORTHO05D005708 1.9e-09 65.5 34 88.2
Hund12552 Selenicereus undatus HOM05D001703 ORTHO05D005708 1.9e-09 65.5 34 88.2
Rhsim02G0217000 Rhododendron simsii HOM05D001703 ORTHO05D005708 3.2e-09 64.7 34 85.3
Rhsim02G0217200 Rhododendron simsii HOM05D001703 ORTHO05D005708 3.2e-09 64.7 34 85.3
vmacro13467 Vaccinium macrocarpon HOM05D001703 ORTHO05D005708 3.2e-09 64.7 34 85.3
Atru.chr5.204 Acer truncatum HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Ciclev10018974m.g Citrus clementina HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Duzib138G1530 Durio zibethinus HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Gohir.A07G147800 Gossypium hirsutum HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Gohir.A11G077500 Gossypium hirsutum HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Gohir.D07G154000 Gossypium hirsutum HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
Gorai.001G176200 Gossypium raimondii HOM05D001703 ORTHO05D005708 4.2e-09 64.3 34 85.3
SGA_v2.0_scaffold153G36946 Striga asiatica HOM05D001703 ORTHO05D005708 4.2e-09 64.3 33 87.9
Ah.05g167390 Amaranthus hybridus HOM05D001703 ORTHO05D005708 5.4e-09 63.9 34 85.3
CiPaw.13G030200 Carya illinoinensis HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 87.9
DCAR_031877 Daucus carota HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 87.9
Nn6g33913 Nelumbo nucifera HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 87.9
SalBow5G4945 Salvia bowleyana HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 90.9
Sc12g0008260 Simmondsia chinensis HOM05D001703 ORTHO05D005708 5.4e-09 63.9 34 85.3
Thecc.01G387100 Theobroma cacao HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 87.9
TPR.G18025 Trifolium pratense HOM05D001703 ORTHO05D005708 5.4e-09 63.9 33 87.9
Aa31LG1G26610 Aethionema arabicum HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 84.8
arahy.Tifrunner.gnm1.ann1.D1YXCG Arachis hypogaea HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 87.9
arahy.Tifrunner.gnm1.ann1.D5QJZZ Arachis hypogaea HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 87.9
arahy.Tifrunner.gnm1.ann1.FL2079 Arachis hypogaea HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 87.9
arahy.Tifrunner.gnm1.ann1.XEJ3YL Arachis hypogaea HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 87.9
Cc02_g24480 Coffea canephora HOM05D001703 ORTHO05D005708 7.1e-09 63.5 34 82.4
Dinv44101 Davidia involucrata HOM05D001703 ORTHO05D005708 7.1e-09 63.5 34 82.4
VMungo1383G1201 Vigna mungo HOM05D001703 ORTHO05D005708 7.1e-09 63.5 33 87.9
Cpa.g.sc218.3 Carica papaya HOM05D001703 ORTHO05D005708 9.3e-09 63.2 34 82.4
AUR62034061 Chenopodium quinoa HOM05D001703 ORTHO05D005708 9.3e-09 63.2 34 82.4
Hma1.2p1_1040F.1_g250930 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 9.3e-09 63.2 34 82.4
Hma1.2p1_1098F.1_g256720 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 9.3e-09 63.2 34 82.4
unitig_0.g1321 Utricularia gibba HOM05D001703 ORTHO05D005708 9.3e-09 63.2 33 87.9
Oeu061508.1 Olea europaea HOM05D001703 ORTHO05D005708 1.2e-08 62.8 34 85.3
PSO063G3743 Papaver somniferum HOM05D001703 ORTHO05D005708 1.2e-08 62.8 34 82.4
Potri.003G109900 Populus trichocarpa HOM05D001703 ORTHO05D005708 1.2e-08 62.8 34 82.4
CsaV3_6G008600 Cucumis sativus L. HOM05D001703 ORTHO05D005708 1.6e-08 62.4 33 81.8
Lalb_Chr03g0039991 Lupinus albus HOM05D001703 ORTHO05D005708 1.6e-08 62.4 33 84.8
Peaxi162Scf00377g00725 Petunia axillaris HOM05D001703 ORTHO05D005708 1.6e-08 62.4 33 84.8
Sed0002552 Sechium edule HOM05D001703 ORTHO05D005708 1.6e-08 62.4 33 81.8
THA.LOC104827585 Tarenaya hassleriana HOM05D001703 ORTHO05D005708 1.6e-08 62.4 33 84.8
TAR375G0518 Trochodendron aralioides HOM05D001703 ORTHO05D005708 1.6e-08 62.4 34 82.4
Actinidia12665 Actinidia chinensis HOM05D001703 ORTHO05D005708 2.1e-08 62.0 34 82.4
CSS0006474 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 2.1e-08 62.0 34 82.4
CSS0031871 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 2.1e-08 62.0 34 82.4
COL.COLO4_12454 Corchorus olitorius HOM05D001703 ORTHO05D005708 2.1e-08 62.0 34 82.4
MELO3C022276.2 Cucumis melo HOM05D001703 ORTHO05D005708 2.1e-08 62.0 33 81.8
Potri.001G123600 Populus trichocarpa HOM05D001703 ORTHO05D005708 2.1e-08 62.0 34 82.4
QL09p011009 Quercus lobata HOM05D002314 ORTHO05D002538 2.1e-08 62.0 30 96.7
Aqoxy5G03848 Aquilegia oxysepala HOM05D001703 ORTHO05D005708 2.7e-08 61.6 34 79.4
AUR62033018 Chenopodium quinoa HOM05D001703 ORTHO05D005708 2.7e-08 61.6 33 81.8
Thhalv10001325m.g Eutrema salsugineum HOM05D001703 ORTHO05D005708 2.7e-08 61.6 33 81.8
Glyma.01G075400 Glycine max HOM05D001703 ORTHO05D005708 2.7e-08 61.6 33 81.8
Glyma.11G163201 Glycine max HOM05D001703 ORTHO05D005708 2.7e-08 61.6 33 81.8
Gorai.007G087600 Gossypium raimondii HOM05D001703 ORTHO05D005708 2.7e-08 61.6 34 82.4
PSO782G2754 Papaver somniferum HOM05D001703 ORTHO05D005708 2.7e-08 61.6 34 79.4
TPR.G39063 Trifolium pratense HOM05D001703 ORTHO05D005708 2.7e-08 61.6 33 81.8
ClCG06G002530 Citrullus lanatus HOM05D001703 ORTHO05D005708 3.5e-08 61.2 33 81.8
Eucgr.D02509 Eucalyptus grandis HOM05D001703 ORTHO05D005708 3.5e-08 61.2 33 84.8
FvH4_7g10500 Fragaria vesca HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
FAN01G2709 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
FAN06G1838 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
FAN06G3291 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
FAN10G2068 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
FAN10G3449 Fragaria x ananassa HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 79.4
Os03g0565500 Oryza sativa ssp. japonica HOM05D001703 ORTHO05D005708 3.5e-08 61.2 34 82.4
Phvul.008G157300 Phaseolus vulgaris HOM05D001703 ORTHO05D005708 3.5e-08 61.2 33 81.8
HPP92_020903 Vanilla planifolia HOM05D001703 ORTHO05D005708 3.5e-08 61.2 59 50.8
CAN.G899.24 Capsicum annuum HOM05D001703 ORTHO05D005708 4.6e-08 60.8 33 84.8
Migut.B01569 Erythranthe guttata HOM05D001703 ORTHO05D005708 4.6e-08 60.8 33 84.8
Lalb_Chr01g0021531 Lupinus albus HOM05D001703 ORTHO05D005708 4.6e-08 60.8 34 82.4
Psat3g052960 Pisum sativum HOM05D001703 ORTHO05D005708 4.6e-08 60.8 33 84.8
Cfa011126 Carpinus fangiana HOM05D001703 ORTHO05D005708 7.9e-08 60.1 33 81.8
PGR004G2547 Punica granatum HOM05D001703 ORTHO05D005708 7.9e-08 60.1 33 81.8
Haze_02737 Corylus avellana HOM05D001703 ORTHO05D005708 1.0e-07 59.7 33 81.8
Lj1g0021366 Lotus japonicus HOM05D001703 ORTHO05D005708 1.0e-07 59.7 33 78.8
Nitab4.5_0001823g0080 Nicotiana tabacum HOM05D001703 ORTHO05D005708 1.0e-07 59.7 33 81.8
Nitab4.5_0003110g0050 Nicotiana tabacum HOM05D001703 ORTHO05D005708 1.0e-07 59.7 33 81.8
Actinidia33491 Actinidia chinensis HOM05D001703 ORTHO05D005708 1.3e-07 59.3 33 81.8
ATR0564G237 Amborella trichopoda HOM05D001703 ORTHO05D005708 1.3e-07 59.3 34 79.4
HanXRQChr04g0123481 Helianthus annuus HOM05D001703 ORTHO05D005708 1.3e-07 59.3 33 81.8
Prupe.2G134500 Prunus persica HOM05D001703 ORTHO05D005708 1.3e-07 59.3 33 81.8
Sp4g27090 Schrenkiella parvula HOM05D001703 ORTHO05D005708 1.3e-07 59.3 33 78.8
Zm00001eb064310 Zea mays HOM05D001703 ORTHO05D005708 1.3e-07 59.3 34 79.4
MBI07_g35164_MAGBIO Magnolia biondii HOM05D001703 ORTHO05D005708 1.8e-07 58.9 34 76.5
Medtr7g044770 Medicago truncatula HOM05D001703 ORTHO05D005708 1.8e-07 58.9 33 78.8
RcHm_v2.0_Chr1g0348291 Rosa chinensis HOM05D001703 ORTHO05D005708 1.8e-07 58.9 34 76.5
Solyc01g090690.4 Solanum lycopersicum HOM05D001703 ORTHO05D005708 1.8e-07 58.9 33 81.8
Sopen01g036420 Solanum pennellii HOM05D001703 ORTHO05D005708 1.8e-07 58.9 33 81.8
PGSC0003DMG400026030 Solanum tuberosum HOM05D001703 ORTHO05D005708 1.8e-07 58.9 33 81.8
MD07G1111000 Malus domestica HOM05D001703 ORTHO05D005708 2.3e-07 58.5 33 78.8
Gohir.D11G081900 Gossypium hirsutum HOM05D001703 ORTHO05D005708 3.0e-07 58.2 34 79.4
Sabra03G0076100 Salix brachista HOM05D001703 ORTHO05D005708 3.0e-07 58.2 34 79.4
Duzib133G0844 Durio zibethinus HOM05D001703 ORTHO05D005708 3.9e-07 57.8 34 79.4
Psat3g157880 Pisum sativum HOM05D001703 ORTHO05D005708 3.9e-07 57.8 33 81.8
QL11p052913 Quercus lobata HOM05D001703 ORTHO05D005708 3.9e-07 57.8 30 90.0
Medtr5g078620 Medicago truncatula HOM05D001703 ORTHO05D005708 5.1e-07 57.4 39 66.7
Sabra01G0095200 Salix brachista HOM05D001703 ORTHO05D005708 5.1e-07 57.4 34 73.5
BcaC02g12268 Brassica carinata HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 75.8
A05p05120 Brassica napus HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 75.8
C04p05970 Brassica napus HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 75.8
BolC4t22228H Brassica oleracea HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 75.8
BraA05t19486Z Brassica rapa HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 75.8
Cfa016359 Carpinus fangiana HOM05D002314 ORTHO05D002538 8.7e-07 56.6 30 83.3
Ciclev10005073m.g Citrus clementina HOM05D002314 ORTHO05D002538 8.7e-07 56.6 30 83.3
TWI14G0062 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 78.8
TWI59G0672 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 8.7e-07 56.6 33 78.8
CiPaw.05G258100 Carya illinoinensis HOM05D002314 ORTHO05D002538 1.1e-06 56.2 30 83.3
Haze_00108 Corylus avellana HOM05D002314 ORTHO05D002538 1.9e-06 55.5 30 80.0
Carub.0004s2762 Capsella rubella HOM05D001703 ORTHO05D005708 2.5e-06 55.1 33 72.7
CARHR140280 Cardamine hirsuta HOM05D001703 ORTHO05D005708 2.5e-06 55.1 33 75.8
ECA236G3770 Erigeron canadensis HOM05D001703 ORTHO05D005708 3.3e-06 54.7 33 78.8
Potri.012G032100 Populus trichocarpa HOM05D002314 ORTHO05D002538 3.3e-06 54.7 28 89.3
Medtr2g028350 Medicago truncatula HOM05D001703 ORTHO05D012658 4.3e-06 54.3 32 78.1
Medtr2g028440 Medicago truncatula HOM05D001703 ORTHO05D012658 4.3e-06 54.3 32 78.1
SMO361G0314 Selaginella moellendorffii HOM05D001703 ORTHO05D005708 4.3e-06 54.3 33 75.8
SEGI_18917 Sequoiadendron giganteum HOM05D001703 ORTHO05D005708 4.3e-06 54.3 33 72.7
AL4G44120 Arabidopsis lyrata HOM05D001703 ORTHO05D005708 5.6e-06 53.9 33 72.7
CDE08G1227 Ceratophyllum demersum HOM05D001703 ORTHO05D005708 5.6e-06 53.9 34 67.6
Duzib205G0270 Durio zibethinus HOM05D002314 ORTHO05D002538 5.6e-06 53.9 30 80.0
Sabra12G0021500 Salix brachista HOM05D002314 ORTHO05D002538 5.6e-06 53.9 28 89.3
GSVIVG01028734001 Vitis vinifera HOM05D002314 ORTHO05D002538 5.6e-06 53.9 28 85.7
AagrBONN_evm.TU.Sc2ySwM_340.168 Anthoceros agrestis HOM05D001703 ORTHO05D005708 7.4e-06 53.5 34 67.6
Gohir.A12G252000 Gossypium hirsutum HOM05D002314 ORTHO05D002538 7.4e-06 53.5 30 80.0
Gohir.D12G252900 Gossypium hirsutum HOM05D002314 ORTHO05D002538 7.4e-06 53.5 30 80.0
Gohir.D12G253500 Gossypium hirsutum HOM05D002314 ORTHO05D002538 7.4e-06 53.5 30 80.0
Gorai.008G271000 Gossypium raimondii HOM05D002314 ORTHO05D002538 7.4e-06 53.5 30 80.0
Medtr2g029125 Medicago truncatula HOM05D001703 ORTHO05D012658 7.4e-06 53.5 32 75.0
AT1G45332 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 9.6e-06 53.1 33 69.7
AT2G45030 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 9.6e-06 53.1 33 69.7
COL.COLO4_35660 Corchorus olitorius HOM05D002314 ORTHO05D002538 9.6e-06 53.1 30 80.0
Potri.015G022700 Populus trichocarpa HOM05D002314 ORTHO05D002538 9.6e-06 53.1 28 85.7
Sabra15G0017100 Salix brachista HOM05D002314 ORTHO05D002538 9.6e-06 53.1 28 85.7
TPR.G26360 Trifolium pratense HOM05D001703 ORTHO05D012658 9.6e-06 53.1 33 72.7
TWI39G0815 Tripterygium wilfordii HOM05D002314 ORTHO05D002538 9.6e-06 53.1 32 78.1


User provided reference genes

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