Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 9.9e-74 280.0 142 100.0
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 6.9e-51 204.1 133 84.2
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.1e-47 192.6 143 76.2
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 3.9e-46 188.3 143 71.3
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 3.9e-46 188.3 144 70.8
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 9.1e-35 150.6 142 59.2
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 5.0e-33 144.8 142 57.0
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.0e-33 144.8 142 57.0
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.5e-32 143.3 142 59.2
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.9e-32 142.9 142 56.3
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 9.4e-32 140.6 142 60.6
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.6e-31 139.8 142 56.3
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.1e-31 139.4 142 55.6
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 7.5e-29 131.0 143 57.3
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 7.5e-29 131.0 143 57.3
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 9.7e-29 130.6 144 56.9
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.7e-28 129.8 146 52.7
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.8e-28 129.0 143 55.2
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 2.8e-28 129.0 143 55.2
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 4.8e-28 128.3 143 57.3
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 9.1e-27 124.0 146 52.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.6e-26 123.2 143 57.3
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.5e-26 121.7 144 52.8
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 7.7e-26 120.9 133 56.4
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.8e-25 118.6 143 51.0
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.5e-24 116.7 147 53.1
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 7.2e-24 114.4 147 52.4
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.6e-23 113.2 104 64.4
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 2.7e-23 112.5 151 47.0
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 6.1e-23 111.3 132 56.1
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 8.0e-23 110.9 144 52.1
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 8.0e-23 110.9 143 50.3
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 8.0e-23 110.9 146 50.0
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.0e-22 110.5 145 51.7
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 3.0e-22 109.0 143 51.0
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.2e-21 107.1 129 52.7
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 2.6e-21 105.9 139 48.9
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 7.5e-21 104.4 139 47.5
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 9.8e-21 104.0 142 50.7
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.2e-20 102.8 143 44.8
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 2.2e-20 102.8 128 52.3
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 3.7e-20 102.1 145 46.9
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 3.7e-20 102.1 125 53.6
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 8.3e-20 100.9 133 50.4
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 8.3e-20 100.9 150 44.7
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.1e-19 100.5 126 48.4
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 2.4e-19 99.4 139 45.3
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.4e-19 99.4 142 49.3
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.2e-18 97.1 139 46.8
QL02p054616 Quercus lobata HOM05D000017 ORTHO05D004912 3.5e-18 95.5 75 80.0
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 5.9e-18 94.7 142 46.5
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 7.7e-18 94.4 152 45.4
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.0e-17 94.0 139 44.6
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.7e-17 93.2 129 47.3
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.7e-17 93.2 139 44.6
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 3.8e-17 92.0 145 49.7
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 8.6e-17 90.9 150 42.0
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.1e-16 90.5 139 49.6
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.5e-16 90.1 139 44.6
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 3.3e-16 89.0 144 44.4
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.2e-15 87.0 130 44.6
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.2e-15 87.0 111 52.3
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.7e-15 85.1 136 46.3
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.7e-15 85.1 136 46.3
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 8.0e-15 84.3 143 42.7
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 8.0e-15 84.3 133 45.9
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.8e-14 83.2 129 44.2
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 2.3e-14 82.8 141 41.8
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.0e-14 82.4 130 43.8
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 6.8e-14 81.3 136 43.4
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.9e-14 80.9 138 40.6
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 1.5e-13 80.1 145 41.4
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.5e-13 80.1 130 43.8
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 1.5e-13 80.1 140 40.7
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.0e-13 79.7 141 42.6
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 4.4e-13 78.6 141 44.0
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 5.7e-13 78.2 141 44.7
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 5.7e-13 78.2 133 42.1
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 2.2e-12 76.3 133 40.6
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 2.8e-12 75.9 134 47.0
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 2.8e-12 75.9 143 39.2
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.8e-12 75.9 137 39.4
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 6.3e-12 74.7 138 44.2
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 6.3e-12 74.7 115 47.0
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 6.3e-12 74.7 109 48.6
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.1e-11 73.9 126 45.2
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 1.8e-11 73.2 124 40.3
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 2.4e-11 72.8 97 47.4
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 4.1e-11 72.0 135 41.5
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 4.1e-11 72.0 133 41.4
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 5.4e-11 71.6 99 44.4
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 7.0e-11 71.2 109 47.7
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.2e-10 70.5 125 43.2
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.2e-10 70.5 126 40.5
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.6e-10 70.1 139 39.6
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.7e-10 69.3 114 48.2
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 2.7e-10 69.3 124 44.4
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.8e-10 67.8 146 40.4
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.3e-09 67.0 147 38.8
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.7e-09 66.6 104 42.3
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.7e-09 66.6 122 40.2
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 2.3e-09 66.2 140 37.9
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.3e-09 66.2 147 37.4
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.9e-09 65.9 126 41.3
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.9e-09 65.9 135 37.0
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.8e-09 65.5 106 46.2
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 5.0e-09 65.1 112 40.2
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 6.6e-09 64.7 105 41.9
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 6.6e-09 64.7 145 34.5
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 8.6e-09 64.3 126 40.5
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.1e-08 63.9 126 40.5
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.5e-08 63.5 139 38.8
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.5e-08 63.5 139 38.8
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.5e-08 63.5 147 38.8
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 2.5e-08 62.8 139 38.8
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 5.6e-08 61.6 106 43.4
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 9.5e-08 60.8 110 40.9
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 9.5e-08 60.8 139 36.0
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 2.1e-07 59.7 114 36.0
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 2.8e-07 59.3 110 38.2
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 2.8e-07 59.3 119 36.1
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 3.6e-07 58.9 100 41.0
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 6.1e-07 58.2 110 44.5
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 8.0e-07 57.8 106 42.5
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 1.4e-06 57.0 92 42.4
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 1.4e-06 57.0 106 43.4
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 1.4e-06 57.0 136 35.3
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 1.8e-06 56.6 142 37.3
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 1.8e-06 56.6 112 37.5
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.8e-06 56.6 122 37.7
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 2.3e-06 56.2 117 40.2
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 3.0e-06 55.8 104 40.4
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 4.0e-06 55.5 125 40.8
Phvul.008G166200 Phaseolus vulgaris HOM05D011727 ORTHO05D004912 4.0e-06 55.5 102 43.1
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 4.0e-06 55.5 104 40.4
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 5.2e-06 55.1 126 38.1
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 6.8e-06 54.7 109 41.3
arahy.Tifrunner.gnm1.ann1.M63A4X Arachis hypogaea HOM05D007398 ORTHO05D004912 8.9e-06 54.3 101 40.6
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 8.9e-06 54.3 147 36.7
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 8.9e-06 54.3 109 38.5


User provided reference genes

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