Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 4.4e-127 458.0 233 100.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 6.3e-118 427.6 233 93.6
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 4.4e-103 378.3 233 79.0
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 3.2e-101 372.1 233 79.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.5e-100 368.6 234 77.4
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 4.6e-100 368.2 233 77.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.3e-96 355.9 256 70.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.6e-95 352.4 233 77.3
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.7e-94 349.7 233 74.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.2e-94 349.4 234 75.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.9e-94 349.0 234 75.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.7e-94 348.6 233 76.0
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.4e-94 347.8 233 74.2
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 8.3e-94 347.4 233 74.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.9e-93 346.3 222 76.6
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 5.4e-93 344.7 234 72.6
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 9.2e-93 344.0 218 78.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 9.2e-93 344.0 233 73.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 9.2e-93 344.0 233 74.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.2e-92 343.6 233 73.0
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.6e-92 343.2 234 74.4
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.7e-92 342.4 234 73.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 3.5e-92 342.0 233 73.4
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.6e-92 341.7 234 73.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 6.0e-92 341.3 234 73.1
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 6.0e-92 341.3 233 73.0
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.0e-91 339.0 234 72.2
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.0e-91 339.0 234 73.1
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.0e-91 339.0 234 72.2
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.0e-91 339.0 233 71.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 3.9e-91 338.6 233 72.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 5.0e-91 338.2 234 72.2
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 6.6e-91 337.8 233 73.0
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.5e-90 336.7 235 73.6
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.9e-90 336.3 234 71.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.5e-90 335.9 235 72.3
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.3e-90 335.5 234 73.9
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.3e-90 334.3 235 72.8
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 7.3e-90 334.3 234 69.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-89 333.6 234 69.7
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.2e-89 333.6 222 74.8
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-89 333.2 234 70.5
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.1e-89 332.8 231 73.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.1e-89 332.8 234 70.5
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 6.2e-89 331.3 254 68.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.1e-88 330.5 216 75.5
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.4e-88 330.1 291 62.2
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.4e-88 330.1 222 73.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.8e-88 329.7 234 71.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.8e-88 329.7 231 73.2
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 4.0e-88 328.6 234 71.4
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 4.0e-88 328.6 233 73.8
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.8e-88 327.8 231 72.7
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 8.9e-88 327.4 231 72.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.9e-88 327.4 231 72.3
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 8.9e-88 327.4 234 69.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.5e-87 326.6 233 70.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.6e-87 325.9 238 71.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 3.4e-87 325.5 219 71.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.4e-87 325.5 223 73.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 5.8e-87 324.7 236 70.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.8e-87 324.7 233 70.0
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.5e-87 324.3 224 73.7
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.8e-87 323.9 234 70.9
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.8e-87 323.9 234 70.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-86 323.6 209 74.6
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.7e-86 323.2 234 70.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.9e-86 322.4 234 70.1
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 4.9e-86 321.6 225 71.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.9e-86 321.6 234 69.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-86 321.2 213 74.6
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 6.4e-86 321.2 222 73.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.1e-85 320.5 235 70.6
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.9e-85 319.7 226 71.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.9e-85 319.7 234 71.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 2.4e-85 319.3 215 73.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 4.1e-85 318.5 228 68.9
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.1e-85 318.5 234 70.9
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 7.1e-85 317.8 224 71.4
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 9.2e-85 317.4 207 75.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 2.7e-84 315.8 231 69.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.6e-84 315.1 235 68.9
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 6.0e-84 314.7 214 72.9
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.8e-84 314.3 231 70.1
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.0e-83 313.9 216 72.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.0e-83 313.9 223 71.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-83 313.2 217 72.4
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-83 313.2 230 70.9
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.0e-83 312.4 233 67.8
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.0e-83 312.4 223 72.2
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.9e-83 312.0 233 67.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.9e-83 312.0 234 68.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.1e-83 311.6 230 70.9
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 6.6e-83 311.2 224 71.0
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 6.6e-83 311.2 234 67.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 8.6e-83 310.8 230 69.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-82 310.5 235 68.9
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 3.3e-82 308.9 223 70.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 7.3e-82 307.8 255 62.7
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 7.3e-82 307.8 240 64.6
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-81 306.6 211 73.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 4.7e-81 305.1 234 67.9
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 8.1e-81 304.3 216 69.9
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.1e-81 304.3 233 65.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.4e-80 303.5 218 69.7
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.3e-80 302.8 213 70.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.1e-80 302.4 264 61.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-79 299.7 227 68.7
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 3.4e-79 298.9 228 65.4
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.4e-79 298.5 215 71.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 5.8e-79 298.1 233 67.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.3e-78 297.0 218 69.3
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 6.4e-78 294.7 217 71.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.2e-76 290.4 224 65.2
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.1e-76 289.7 216 65.7
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.5e-76 288.9 224 67.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.1e-73 279.6 168 83.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.4e-72 276.2 316 50.6
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 4.0e-72 275.4 209 63.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.2e-72 275.0 234 62.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 7.6e-71 271.2 169 79.9
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.6e-68 263.5 207 61.4
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.7e-68 262.7 162 79.6
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 3.3e-66 255.8 233 60.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.0e-64 248.8 218 63.8
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-63 246.1 233 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.4e-61 239.6 223 53.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 9.3e-61 237.7 216 59.3
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.8e-59 233.4 160 70.6
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.8e-57 226.1 205 58.5
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 8.1e-57 224.6 136 80.1
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.1e-56 224.2 221 52.0
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.4e-55 219.2 174 58.6
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 7.6e-55 218.0 128 82.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.9e-54 216.1 172 66.3
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.1e-53 214.2 176 63.6
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.1e-53 214.2 183 57.4
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.4e-53 213.8 144 75.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.4e-53 213.0 175 63.4
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.3e-51 207.2 256 44.1
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.8e-49 198.7 116 79.3
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 5.8e-47 191.8 187 56.7
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 6.5e-46 188.3 103 84.5
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 6.5e-46 188.3 302 39.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.5e-45 185.3 218 47.7
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.7e-44 183.0 119 73.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 5.3e-40 168.7 226 43.8
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.9e-37 160.2 186 47.8
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.2e-37 159.5 177 52.5
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.6e-36 156.0 189 50.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-31 141.0 126 61.1
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.2e-28 131.0 106 62.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.7e-28 129.8 81 77.8
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.0e-27 127.9 106 61.3
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-26 124.4 106 61.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.3e-25 120.9 150 49.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-25 119.8 167 44.9
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-24 117.9 75 74.7
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-23 112.8 154 44.8
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 3.2e-21 106.3 62 80.6
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.5e-21 105.5 110 54.5
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.6e-20 104.0 173 39.9
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 6.1e-20 102.1 58 82.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-19 101.3 80 61.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.0e-19 101.3 114 53.5
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 5.2e-19 99.0 67 71.6
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.1e-18 97.8 233 34.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.7e-17 94.0 78 56.4
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.4e-16 90.9 137 42.3
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.6e-15 87.4 98 50.0
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 8.0e-12 75.1 46 76.1
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 5.2e-11 72.4 60 51.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.5e-10 70.9 46 69.6
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 1.1e-08 64.7 38 76.3
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.4e-08 63.5 52 61.5
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 1.3e-06 57.8 98 39.8
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 2.2e-06 57.0 121 37.2


User provided reference genes

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