Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p031765 Quercus lobata HOM05D000138 ORTHO05D000167 5.9e-42 173.7 84 100.0
QL06p035893 Quercus lobata HOM05D000138 ORTHO05D000078 4.6e-18 94.4 46 97.8
QL08p010472 Quercus lobata HOM05D000138 ORTHO05D337495 1.0e-17 93.2 46 97.8
Manes.13G100600 Manihot esculenta HOM05D000138 ORTHO05D000078 2.4e-14 82.0 46 84.8
Manes.12G125500 Manihot esculenta HOM05D000138 ORTHO05D000078 8.9e-14 80.1 46 82.6
CiPaw.07G046800 Carya illinoinensis HOM05D000138 ORTHO05D000078 1.5e-13 79.3 64 60.9
Cpa.g.sc55.15 Carica papaya HOM05D000138 ORTHO05D000078 2.0e-13 79.0 46 80.4
CiPaw.08G140800 Carya illinoinensis HOM05D000138 ORTHO05D000078 2.0e-13 79.0 46 80.4
Haze_03884 Corylus avellana HOM05D000138 ORTHO05D000078 2.0e-13 79.0 49 75.5
Potri.007G011600 Populus trichocarpa HOM05D000138 ORTHO05D000078 2.0e-13 79.0 46 80.4
Sabra07G0009000 Salix brachista HOM05D000138 ORTHO05D000078 2.0e-13 79.0 65 63.1
GSVIVG01004382001 Vitis vinifera HOM05D000138 ORTHO05D000078 1.4e-11 72.8 49 71.4
ClCG10G007780 Citrullus lanatus HOM05D000138 ORTHO05D000078 3.2e-11 71.6 46 67.4
COL.COLO4_27366 Corchorus olitorius HOM05D000138 ORTHO05D000078 2.1e-10 68.9 79 57.0
Gohir.D10G099700 Gossypium hirsutum HOM05D000138 ORTHO05D000078 3.5e-10 68.2 89 46.1
Gorai.011G109500 Gossypium raimondii HOM05D000138 ORTHO05D000078 3.5e-10 68.2 89 46.1
SHI21865 Sapria himalayana HOM05D000138 ORTHO05D000078 3.5e-10 68.2 46 69.6
Thecc.01G089400 Theobroma cacao HOM05D000138 ORTHO05D000078 3.5e-10 68.2 79 53.2
MELO3C016413.2 Cucumis melo HOM05D000138 ORTHO05D000078 3.9e-09 64.7 45 66.7
CsaV3_3G006900 Cucumis sativus L. HOM05D000138 ORTHO05D000078 3.9e-09 64.7 45 66.7
Prupe.6G203000 Prunus persica HOM05D000138 ORTHO05D000078 3.9e-09 64.7 52 65.4
Atru.chr3.1234 Acer truncatum HOM05D000138 ORTHO05D000078 5.1e-09 64.3 50 68.0
CANSAT01G1546 Cannabis sativa HOM05D000138 ORTHO05D000078 6.6e-09 63.9 51 66.7
TWI53G0559 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 6.6e-09 63.9 47 78.7
VMungo1215G0427 Vigna mungo HOM05D000138 ORTHO05D000078 8.7e-09 63.5 49 63.3
Duzib187G0129 Durio zibethinus HOM05D000138 ORTHO05D000078 1.1e-08 63.2 51 68.6
Sed0012684 Sechium edule HOM05D000138 ORTHO05D000078 1.5e-08 62.8 46 67.4
TWI74G0907 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 1.5e-08 62.8 45 77.8
Gohir.A02G145100 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.9e-08 62.4 54 68.5
Gohir.D03G035500 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.9e-08 62.4 54 68.5
Gorai.003G037100 Gossypium raimondii HOM05D000138 ORTHO05D000078 1.9e-08 62.4 54 68.5
Duzib147G0861 Durio zibethinus HOM05D000138 ORTHO05D000078 2.5e-08 62.0 77 51.9
THA.LOC104819288 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 3.3e-08 61.6 46 71.7
Ciclev10025339m.g Citrus clementina HOM05D000138 ORTHO05D000078 5.6e-08 60.8 51 62.7
Glyma.01G022500 Glycine max HOM05D000138 ORTHO05D000078 5.6e-08 60.8 47 63.8
BcaB01g05523 Brassica carinata HOM05D000138 ORTHO05D000078 7.3e-08 60.5 45 68.9
A03p04620 Brassica napus HOM05D000138 ORTHO05D000078 7.3e-08 60.5 45 68.9
C03p05290 Brassica napus HOM05D000138 ORTHO05D000078 7.3e-08 60.5 45 68.9
BolC3t13043H Brassica oleracea HOM05D000138 ORTHO05D000078 7.3e-08 60.5 45 68.9
BraA03t09803Z Brassica rapa HOM05D000138 ORTHO05D000078 7.3e-08 60.5 45 68.9
MD01G1040700 Malus domestica HOM05D000138 ORTHO05D000078 7.3e-08 60.5 50 64.0
Phvul.002G146400 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 7.3e-08 60.5 96 41.7
Gohir.A10G088200 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.2e-07 59.7 50 64.0
MD15G1310900 Malus domestica HOM05D000138 ORTHO05D000078 2.8e-07 58.5 50 62.0
Lalb_Chr16g0381611 Lupinus albus HOM05D000138 ORTHO05D000078 3.6e-07 58.2 44 59.1
QL04p012103 Quercus lobata HOM05D000003 ORTHO05D000167 3.6e-07 58.2 38 68.4
QL07p013392 Quercus lobata HOM05D000003 ORTHO05D000167 4.7e-07 57.8 38 68.4
Aa31LG3G16640 Aethionema arabicum HOM05D000138 ORTHO05D000078 6.2e-07 57.4 45 66.7
Glyma.09G199800 Glycine max HOM05D000138 ORTHO05D000078 6.2e-07 57.4 44 63.6
AT5G10510 Arabidopsis thaliana HOM05D000138 ORTHO05D000078 8.1e-07 57.0 50 62.0
CARHR202780 Cardamine hirsuta HOM05D000138 ORTHO05D000078 8.1e-07 57.0 50 62.0
AL6G21030 Arabidopsis lyrata HOM05D000138 ORTHO05D000078 1.1e-06 56.6 46 65.2
Carub.0006s0899 Capsella rubella HOM05D000138 ORTHO05D000078 1.1e-06 56.6 46 65.2
Thhalv10013081m.g Eutrema salsugineum HOM05D000138 ORTHO05D000078 1.1e-06 56.6 46 65.2
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.1e-06 56.6 38 65.8
Sp6g32920 Schrenkiella parvula HOM05D000138 ORTHO05D000078 1.1e-06 56.6 46 65.2
A10p27060 Brassica napus HOM05D000138 ORTHO05D000078 1.4e-06 56.2 47 63.8
C09p66750 Brassica napus HOM05D000138 ORTHO05D000078 1.4e-06 56.2 47 63.8
BolC9t59456H Brassica oleracea HOM05D000138 ORTHO05D000078 1.4e-06 56.2 47 63.8
BraA10t44758Z Brassica rapa HOM05D000138 ORTHO05D000078 1.4e-06 56.2 47 63.8
QL02p050812 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-06 55.8 37 64.9
BcaC03g13314 Brassica carinata HOM05D000138 ORTHO05D000078 2.4e-06 55.5 46 63.0
A02p00510 Brassica napus HOM05D000138 ORTHO05D000078 2.4e-06 55.5 46 63.0
C02p04500 Brassica napus HOM05D000138 ORTHO05D000078 2.4e-06 55.5 46 63.0
BolC2t06410H Brassica oleracea HOM05D000138 ORTHO05D000078 2.4e-06 55.5 46 63.0
BraA02t05035Z Brassica rapa HOM05D000138 ORTHO05D000078 2.4e-06 55.5 46 63.0
arahy.Tifrunner.gnm1.ann1.N9BW0I Arachis hypogaea HOM05D000138 ORTHO05D000078 3.1e-06 55.1 46 58.7
arahy.Tifrunner.gnm1.ann1.RWA9J9 Arachis hypogaea HOM05D000138 ORTHO05D000078 3.1e-06 55.1 46 58.7
QL05p060814 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-06 54.7 40 62.5
BcaB05g21486 Brassica carinata HOM05D000138 ORTHO05D000078 5.2e-06 54.3 46 63.0
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 5.2e-06 54.3 38 63.2
QL06p011527 Quercus lobata HOM05D000003 ORTHO05D000167 6.9e-06 53.9 34 73.5
Sed0002629 Sechium edule HOM05D000138 ORTHO05D000078 9.0e-06 53.5 45 55.6


User provided reference genes

Program Settings