Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.9e-167 592.4 304 100.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.5e-155 550.8 301 92.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 3.9e-152 541.6 301 91.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 5.3e-149 531.2 301 88.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.7e-147 526.2 301 89.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.2e-147 525.8 301 88.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 3.8e-147 525.0 300 89.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 8.5e-147 523.9 300 88.7
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.6e-145 519.6 301 87.0
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.1e-145 519.2 301 87.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 6.7e-144 514.2 303 86.1
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.5e-143 512.3 301 87.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.7e-143 511.1 301 86.4
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 9.7e-143 510.4 301 86.0
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.7e-142 509.6 302 86.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.2e-142 509.2 301 87.4
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-141 506.1 302 85.4
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.8e-141 506.1 302 85.4
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.8e-141 506.1 301 85.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 6.9e-141 504.2 300 85.7
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 9.1e-141 503.8 311 83.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.2e-140 503.4 301 85.0
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.6e-140 502.3 301 84.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.3e-139 500.0 301 84.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 9.4e-138 493.8 301 84.7
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.1e-137 492.7 301 82.1
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.7e-137 491.5 302 81.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.1e-137 491.1 301 84.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.1e-136 488.0 304 84.5
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.0e-135 486.1 301 83.7
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 9.7e-135 483.8 302 83.4
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.7e-134 483.0 301 83.4
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.8e-134 482.3 301 83.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 3.7e-134 481.9 302 84.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.4e-133 479.9 301 83.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.4e-133 479.2 297 84.2
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.4e-133 479.2 301 81.7
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-132 475.3 299 81.6
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 5.9e-132 474.6 297 81.8
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 2.2e-131 472.6 301 79.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 6.5e-131 471.1 299 81.3
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.5e-131 471.1 299 81.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-129 466.8 299 80.3
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 6.1e-129 464.5 297 80.1
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-128 463.8 313 78.0
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.8e-128 463.0 301 79.7
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.0e-127 459.5 296 81.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.0e-127 459.5 293 80.2
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.6e-127 459.1 301 77.1
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.2e-126 456.1 353 72.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.8e-126 455.7 278 84.9
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.7e-126 455.3 301 79.7
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.8e-125 453.0 297 79.8
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.4e-125 452.6 300 77.3
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 9.1e-125 450.7 303 78.9
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-124 449.9 300 77.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.0e-124 449.5 297 79.1
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.5e-124 448.7 298 77.9
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.9e-124 448.0 298 77.9
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 5.0e-123 444.9 274 83.2
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 5.0e-123 444.9 300 75.7
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 6.5e-123 444.5 302 76.8
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-122 443.7 302 76.8
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-122 442.6 300 75.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.2e-122 441.8 274 82.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 9.4e-122 440.7 301 76.4
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 9.4e-122 440.7 302 75.8
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.6e-121 439.9 274 82.8
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-121 439.9 300 76.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.1e-121 439.5 300 76.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.7e-121 438.3 298 76.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 8.0e-121 437.6 302 76.5
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.0e-120 437.2 301 77.7
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.2e-119 433.7 302 75.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.5e-119 433.3 274 81.8
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.6e-119 432.6 299 77.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.8e-118 429.1 320 71.9
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.8e-118 429.1 303 74.9
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.4e-117 426.8 299 75.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.4e-117 426.0 262 85.1
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 3.1e-117 425.6 301 74.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 4.1e-117 425.2 301 74.8
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.3e-117 424.9 320 71.6
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 5.3e-117 424.9 300 73.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 9.1e-117 424.1 301 74.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.6e-116 423.3 296 77.7
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 2.7e-116 422.5 296 76.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.5e-116 422.2 274 81.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.0e-115 420.6 271 80.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.0e-115 420.6 306 75.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.3e-115 420.2 261 85.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.7e-115 419.9 301 74.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.8e-115 418.7 271 79.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.0e-115 418.3 303 73.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.5e-114 416.8 296 76.0
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.9e-114 416.4 304 74.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.4e-114 414.1 294 73.1
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.7e-113 412.5 308 72.4
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 3.6e-113 412.1 303 73.6
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-112 410.6 253 83.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.0e-112 410.6 294 75.5
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.7e-110 403.3 300 72.7
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 4.1e-109 398.7 269 77.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 4.1e-109 398.7 245 85.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-107 394.0 250 81.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-107 393.7 250 81.6
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.3e-107 392.9 250 81.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 6.6e-107 391.3 276 75.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.1e-105 384.8 215 89.8
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.8e-104 383.3 250 80.8
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.3e-104 382.9 240 83.3
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 6.8e-104 381.3 320 66.6
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 8.9e-104 380.9 247 81.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.3e-102 377.1 306 67.3
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 5.4e-101 371.7 254 76.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.5e-98 363.6 301 66.1
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-97 359.0 218 84.9
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-94 350.5 301 64.1
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.7e-94 350.1 287 67.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 8.3e-94 347.8 224 82.6
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.2e-93 344.4 294 63.6
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-92 344.0 299 65.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.7e-91 340.1 286 67.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.9e-86 322.8 236 75.0
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.5e-84 315.8 246 69.9
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.0e-83 314.3 215 78.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-82 310.5 182 86.8
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-81 307.0 179 86.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 8.1e-81 304.7 262 64.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.8e-80 303.5 256 65.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 8.3e-78 294.7 308 54.5
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.2e-77 292.7 322 51.6
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.7e-75 287.0 310 52.3
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 6.6e-75 285.0 267 61.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.8e-73 279.6 236 63.6
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 8.9e-72 274.6 280 55.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.3e-70 270.8 252 60.3
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.2e-69 265.8 179 73.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 5.1e-67 258.8 175 72.0
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.1e-65 251.5 161 79.5
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.0e-63 246.9 255 59.6
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.9e-63 244.6 137 89.1
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.4e-61 240.0 204 65.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 9.0e-56 221.5 175 69.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.3e-51 206.8 149 71.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.9e-51 206.1 158 70.9
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.9e-50 203.8 242 46.3
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.9e-43 179.5 119 79.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.8e-41 172.6 112 79.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.7e-31 138.7 82 85.4
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.9e-30 136.7 80 85.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-26 123.6 64 93.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.8e-24 117.5 97 66.0
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 9.4e-21 105.1 66 81.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.2e-14 84.0 115 52.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.8e-14 83.2 86 55.8
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-13 81.6 53 77.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.4e-11 74.7 51 76.5
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 6.3e-09 65.9 66 59.1
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 1.0e-06 58.5 122 39.3


User provided reference genes

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